Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq186 176 9e-39 seq83690 163 6e-35 seq18 163 6e-35 seq165 118 2e-21 seq2580 86.0 1e-11 seq1401 86.0 1e-11 seq742 86.0 1e-11 >seq186 Length=148488 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| | || ||| || |||||||||||||| | | Sbjct 14080 CCACCACGAAGACGCAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAA 14021 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||| Sbjct 14020 AGGGTACGGCCATCCTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGA 13961 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || || ||||| ||||| || | || || || || || | ||| ||| Sbjct 13960 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACT 13901 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| || |||| ||| |||||||| || ||||| Sbjct 13900 TCCAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACGAAAATTTGCAT 13854 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||||| || || |||||||| || | ||||||||||||||| Sbjct 13816 TCCTTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAG 13757 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || || || || || || |||||||| |||||||| || || ||| | Sbjct 13756 ATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 13697 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| || | || ||||||||||| || ||||| || || | ||||| || Sbjct 13696 TCAATAGTGTCAGAGGGCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACA 13637 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 13636 AAGATCTGCAT 13626 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | || ||||| | || || || || ||||||||||||| | Sbjct 13170 CCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 13111 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || ||||| || || ||||| |||| ||| || ||||| ||| Sbjct 13110 AGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGA 13051 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || || | || || || || || | ||||| Sbjct 13050 ATGCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGACC 12991 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || |||||||| |||||||| ||||||||||| || || ||||||||| Sbjct 12990 TCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCATT 12943 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | || || || ||||| |||||||||| Sbjct 13625 ACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGA 13566 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || ||||| || ||||||||||||||||| |||||||| || Sbjct 13565 CAGGGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGG 13506 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || || || || || || || || ||||| || |||| |||||| Sbjct 13505 GATCCCCTCCTTATCCTGAAT-TTGGCCTTCAC-GTTTCAATAGTATCAGAAGGTTCGAC 13448 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | ||||| || || |||||||| Sbjct 13447 CTCAAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 13400 Score = 131 bits (144), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||| || || | |||| ||| | || || || |||||||||||||| | | Sbjct 13398 CCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 13339 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| || || || || || || || | |||||| ||||| || Sbjct 13338 AAG-GTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 13280 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||||||||| || || || | || || ||||| || | ||| || Sbjct 13279 GATACCCTCCTTATCTTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAAC 13220 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| || ||||| ||||| || || | || || || || || |||||| Sbjct 13219 TTCAAGGGTGATGGTCTTTCCGGTAAGGGTTTTGACAAAAATTTGCATT 13171 >seq83690 Length=433 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| ||| ||||| ||||||||||| | Sbjct 253 ACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGA 194 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || | ||| || || || ||||||| ||| || ||||| || Sbjct 193 AAGAGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGG 134 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| || || ||| | || ||||| || |||| |||||| Sbjct 133 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTATCGGAAGGTTCGAC 74 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| || || |||||||| Sbjct 73 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 26 Score = 116 bits (128), Expect = 8e-21 Identities = 134/179 (75%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 282921 TTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 ||||| || | ||| || || ||||| || ||||| || ||||||||||||||||| || Sbjct 431 TTGTAATCCGAAAGAGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGC 372 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 ||||| || || || |||||||| || || || || || || | || || ||||| Sbjct 371 TGGTCTGGAGGGATTCCTTCCTTGTCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCA 312 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || ||||||||||| || ||||| || || | ||||| || || |||||||| Sbjct 311 GAGGGCTCAACTTCGAGAGTAATGGTCTT-CCGGTAAGGGTCTTGACAAAGATCTGCAT 254 >seq18 Length=974545 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | || ||||| | ||||| || || ||||| ||||| || | Sbjct 449673 CCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGAC 449614 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || || || ||||||||||||||||| || || || ||| Sbjct 449613 AGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGA 449554 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||||||||| || | || || || || || | ||| || Sbjct 449553 ATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACC 449494 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| || || ||||| | |||||| || || ||||||||||| Sbjct 449493 TCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTT 449444 >seq165 Length=164173 Score = 118 bits (130), Expect = 2e-21 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||| | || || | || ||||| | ||||| || || || || |||||||| | Sbjct 30345 CCACCATGGAGACGCAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAG 30404 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||| || || || ||||||||||||| | | ||||| || | | Sbjct 30405 AGTGTATGGCCATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAA 30464 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| | || | || || || || | ||| ||| Sbjct 30465 ATTCCCTCCTTGTCCTGAATCTTTGCAATCACATTTTCAATGGTTATTGAGGGTTCTACT 30524 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || | ||||| || || |||| ||||||| || || |||||||||| Sbjct 30525 TCCAATGTGATGGTTTTCTCCGT--AAGTCTTCACAAAGATCTGCATTT 30571 >seq2580 Length=21258 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1050 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1106 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1402 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1458 >seq1401 Length=35896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3931 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3987 >seq742 Length=55996 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 43628 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 43684 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 44536 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 44592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045306519552204