Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq26202 152 5e-32 seq2745 145 8e-30 >seq26202 Length=13276 Score = 152 bits (168), Expect = 5e-32 Identities = 300/444 (68%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 23493 ATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTC 23552 || ||| |||| ||||| ||||| ||||| || | |||||||| | | |||| || Sbjct 1473 ATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAAACCTTCATCGCGAGAGATCAGCTC 1414 Query 23553 ATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA 23612 || || ||||| | ||| ||||| | || ||| ||| | ||| || |||| ||| || Sbjct 1413 GTTCGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAA 1354 Query 23613 TGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT 23672 |||| ||||||||| ||||||||||| |||||||| | | |||| ||||| | Sbjct 1353 GCTTCCGCTAAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTT 1294 Query 23673 TGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAAT 23732 || | | | | |||||| | | ||||| |||||| || ||||| | Sbjct 1293 AGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAG 1234 Query 23733 TGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAAT 23792 || ||||| || || ||||| || ||| || | ||| || || || ||||| Sbjct 1233 CGTCTCAATGGCATTGAAGAGGAACTCTTTCTCCTGCGGATCCCGGATGTACGTGTCAAT 1174 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 ||| | ||| ||||| ||| || | ||| || || ||||||||||| ||||| || | Sbjct 1173 TAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 1114 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAAT 23912 |||||| || | | ||| || || | | || | | | | ||| || || ||||| Sbjct 1113 TCTAGCCTCTGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAAT 1054 Query 23913 ACCATCACTAGCAGCAAAGAAAGC 23936 ||||| ||| ||||||||||| Sbjct 1053 CCCATCGGAAGCGGCAAAGAAAGC 1030 >seq2745 Length=20976 Score = 145 bits (160), Expect = 8e-30 Identities = 396/604 (66%), Gaps = 2/604 (0%) Strand=Plus/Minus Query 23493 ATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTC 23552 || ||| |||| ||||| ||||| ||||| || | |||||||| | | |||| || Sbjct 4197 ATGCTTGAACATCAAACAGGCAAAGTCACAGTGCAATCCTTCATCGCGAGAGATCAGCTC 4138 Query 23553 ATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA 23612 || || ||||| | ||| ||||| | || ||| ||| | ||| || |||| ||| || Sbjct 4137 GTTTGAGAATGTGAGTCCGGGCATGATGCCACGTGATTTGAGCCAGAAGATTGAAGCGAA 4078 Query 23613 TGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT 23672 |||| |||||||| ||||||||||| |||||||| | | |||| ||||| | Sbjct 4077 GCTTCCGCTGAAGAAAATGCCCTCAACAGCTGCAAAGGCAATCACACGTTCCCCAAAGTT 4018 Query 23673 TGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAAT 23732 || | | | | |||||| | | ||||| |||||| || ||||| | Sbjct 4017 AGCTTCCTGACTGGCAATCCACTGCAGAGCCCAATCTGCCTTCTTCTTGACACAGGGCAG 3958 Query 23733 TGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAAT 23792 || ||||| || || || || || ||| |||| | ||| || || || ||||| Sbjct 3957 CGTCTCAATGGCATTGAACAGGAACTCTTTCTCTTGAGGATCCCGGATGTACGTGTCAAT 3898 Query 23793 TAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 || | ||| ||||| ||| || | ||| || || ||||||||||| ||||| || | Sbjct 3897 CAGCAGACTGTACATCTCACTGTGCACATTCTCCATGGCAATCTGAAAGCCATAGAAGAA 3838 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAAT 23912 |||||| || | | ||| || || | | || | | | | ||| || || ||||| Sbjct 3837 TCTAGCCTCGGTTATTTGCACCTCCTGACTGAAGCGCTCCACCAGATTCTCATTGACAAT 3778 Query 23913 ACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGA 23972 ||||| ||| || |||||||| | || | || || | || ||| || | Sbjct 3777 CCCATCGGAAGCGGCGAAGAAAGCCAACACGTGGGAAATGAACTTCCTCTCA-CAATCCT 3719 Query 23973 T-AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAAC 24031 | | | ||||| | || ||||||| |||| ||| || || || || ||||| || Sbjct 3718 TCAGTGCATTCCAGTGATCAATATCTCGGGATAGATCCACCTCCTCTACCGTCCAGAAGG 3659 Query 24032 TTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGA 24091 || || | || ||||| ||| || |||| | || || ||||||| |||| Sbjct 3658 ACGCTTCAGCTTGTTTGTACATCTCCCAGATGTCATGGTACTGAATAGGAAATACCACGA 3599 Query 24092 ATCT 24095 |||| Sbjct 3598 ATCT 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520791644036400