Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18 159 2e-34 seq186 156 3e-33 seq83690 107 1e-18 seq165 98.7 7e-16 seq28036 95.1 9e-15 >seq18 Length=974545 Score = 159 bits (176), Expect = 2e-34 Identities = 176/230 (77%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||| || || || ||||||||||| ||||| |||||||| | ||| || | || Sbjct 449659 CAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGACAGTGTACGGCCATC 449600 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| |||||||||||||||||||||||||| | ||| | || ||||| || Sbjct 449599 CTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATTCCCTCCTTGTC 449540 Query 44245 CGTTATCTTCTGCTT-CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||||| || || | ||||| || | || ||||||||||| || || | Sbjct 449539 CTGAATCTT-TGCTTTCACATTTTCAATGGTATCTGAGGGTTCCACCTCCAAGGTGATGG 449481 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA--TGAAAA 44351 | || ||||| || |||||||| ||||| ||||| | |||| |||||| Sbjct 449480 TTTTCCCCGTAAGAGTCTTCACAAAGATCTGCAT--TTTGAAGCTGAAAA 449433 >seq186 Length=148488 Score = 156 bits (172), Expect = 3e-33 Identities = 177/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| || | ||||| |||||||| || |||||| ||||||||||| Sbjct 13859 TTGCATGCCACCTCTGAGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTA 13800 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| || | || |||| ||| ||||||||||||||||||||||||||||| Sbjct 13799 GTCAGAGAGAGTACGGCCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATC 13740 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || || | |||||||| ||| ||||| ||| | |||| | || ||||| | || Sbjct 13739 TGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCAATAGTGTCAGAGG 13681 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 13680 GCTCAACTTCGAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||| ||||| || | || || | || || || ||||| |||||||| Sbjct 13589 CTCCTTCTGGATATTGTAGTCAGACAGGGTACGACCATCTTCAAGTTGCTTTCCGGCAAA 13530 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||| || || | || | || ||||| ||| | | || |||| | || Sbjct 13529 GATCAAACGCTGTTGGTCCGGTGGGATCCCCTCCTTATCC-TGAATTTGGCCTTC-ACGT 13472 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | ||| ||||| | ||||| |||||||| || |||||||| || Sbjct 13471 TTCAATAGTATCAGAAGGTTCGACCTCAAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 13412 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 13411 AAAGATCTGCATG 13399 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||| || ||||| || ||||| ||||||||||| || | || || | || Sbjct 14066 CAGCACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATC 14007 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || || || ||||| ||||| |||||||| ||||| |||| ||| | ||||| || || Sbjct 14006 CTCAAGTTGTTTCCCAGCAAAAATCAAACGTTGCTGGTCTGGAGGAATTCCTTCTTTATC 13947 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| || | || | || || || | | ||| || |||| ||||| || Sbjct 13946 CTGAATCTTGGCTTTGACATTTTCAATTGTATCAGATGGTTCAACTTCCAGAGTAATTGT 13887 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || || || || ||||| ||||||||| Sbjct 13886 CTTTCCGGTCAGAGTTTTAACGAAAATTTGCATG 13853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTC 44184 || |||| ||||| || |||||| ||||||||||| |||| | || | ||| | || Sbjct 13383 AAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGACCATC 13325 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || || || | ||| ||||| |||| || | ||| ||||| || Sbjct 13324 CTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATC 13265 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | | | |||||||| | | ||| || || | || || || Sbjct 13264 TTGGATCTTAGCCTTGACATTCTCAATGGTGTCAGATGGTTCAACTTCAAGGGTGATGGT 13205 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| || ||||| || || || |||||||| Sbjct 13204 CTTTCCGGTAAGGGTTTTGACAAAAATTTGCAT 13172 >seq83690 Length=433 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||||| |||||||| || | || || | || ||| Sbjct 234 ACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCCGAAAGAGTACGGCCATCTTCC 175 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || || ||||||| ||||||||| |||| ||| | |||||||| ||| Sbjct 174 AATTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGG 115 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | || || |||| | ||| ||||| | || || ||||| Sbjct 114 ATCTTGGCCTTGAC-GTTCTCAATAGTATCGGAAGGTTCGACCTCAAGGGTGATGGTCTT 56 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| || ||||| |||||| Sbjct 55 GCCAGTGAGGGTCTTGACAAAGATCTGCATG 25 Score = 96.9 bits (106), Expect = 2e-15 Identities = 115/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || || ||||| ||||||||||||||||||||||| |||| ||| | |||||||| Sbjct 407 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGAGGGATTCCTTCCTTG 348 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| || || ||| | | | |||||||| | || || || || | ||||| Sbjct 347 TCCTGAATTTTAGCCTTGACATTCTCAATGGTGTCAGAGGGCTCAACTTCGAGAGTAATG 288 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || |||||||| || ||||| ||||| Sbjct 287 GTC-TTCCGGTAAGGGTCTTGACAAAGATCTGCAT 254 >seq165 Length=164173 Score = 98.7 bits (108), Expect = 7e-16 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT---TGGCGCTC 44181 |||||| || || || ||||||||||| || || ||||| || | |||| |||| | Sbjct 30359 CAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGGC---C 30415 Query 44182 GTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTT 44241 || | |||||||| ||||||||||||| | |||| ||||||| || | || ||||| Sbjct 30416 ATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCCTT 30475 Query 44242 TTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 ||| ||||| ||| ||| || | ||||| | || ||| || |||| || | Sbjct 30476 GTCCTGAATCTT-TGCAATCACATTTTCAATGGTTATTGAGGGTTCTACTTCCAATGTGA 30534 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| | |||||||| ||||| ||||| Sbjct 30535 TGGTTTTCTCCGTAA--GTCTTCACAAAGATCTGCAT 30569 >seq28036 Length=10335 Score = 95.1 bits (104), Expect = 9e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || ||||||||||| ||||| ||||| || | |||| || | || || Sbjct 7700 CACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAGTCCGAGAGTGTACGGCCATCCTC 7759 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 | |||||| |||| |||||||| |||||||||||| | ||| ||||| || || ||| Sbjct 7760 AACCTGCTTTCCGGAAAAGATCAGACGCTGCTGATCCGGAGGAACACCCTCATTGTCCTA 7819 Query 44248 TATCTTC 44254 |||||| Sbjct 7820 AATCTTC 7826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359521713423642