Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq83690 159 8e-34 seq186 156 1e-32 seq18 156 1e-32 seq7442 118 3e-21 seq67752 107 5e-18 seq60870 105 2e-17 seq7722 105 2e-17 seq64376 102 2e-16 >seq83690 Length=433 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||| ||||| ||| || || Sbjct 29 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAACCTTCCGAT 88 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| |||||||| |||||||||||||| |||||||| Sbjct 89 ACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAGCAG 148 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| || | |||||||| | |||||| | || || ||| | Sbjct 149 CGTCTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACTCTTTCGGACTACAACATT 208 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || |||||||| Sbjct 209 CAAAAGGAATCCACTCTCCATCTTGT 234 Score = 125 bits (138), Expect = 2e-23 Identities = 134/176 (76%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || |||| | | || || ||||| || || ||| ||| Sbjct 257 CAGATCTTTGTCAAGACCCTTACCGGAAGACC-ATTACTCTCGAAGTTGAGCCCTCTGAC 315 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || ||||||||||| |||||||||||||| |||||||| Sbjct 316 ACCATTGAGAATGTCAAGGCTAAAATTCAGGACAAGGAAGGAATCCCTCCAGACCAGCAG 375 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || | ||||| |||||||| || || |||||||| | |||||| | ||||| || Sbjct 376 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGATGGTCGTACTCTTTCGGATTACAA 431 >seq186 Length=148488 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || ||||| || || || || || || ||| || || Sbjct 13857 CAAATTTTCGTTAAAACTCTGACCGGAAAGACAATTACTCTGGAAGTTGAACCATCTGAT 13916 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||||||||| ||||||||||| ||||| ||||||||| Sbjct 13917 ACAATTGAAAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAGCAA 13976 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| || || ||||| | || ||| | || || ||| || Sbjct 13977 CGTTTGATTTTTGCTGGGAAACAACTTGAGGATGGCCGTACCCTTTCGGACTACAACATC 14036 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || |||||||| Sbjct 14037 CAGAAGGAATCAACCCTTCATCTTGT 14062 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| ||||| || || || ||||| || || ||| ||| Sbjct 13629 CAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTTGAGCCCTCTGAC 13688 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| ||||| |||||||| ||||||||||| || || ||||| Sbjct 13689 ACTATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAGCAG 13748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| |||||| | |||||||| | ||||| | || || ||| || Sbjct 13749 CGTTTGATCTTTGCCGGGAAACAGTTGGAAGATGGCCGTACTCTCTCTGACTACAACATC 13808 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || ||||| || || ||||| || | |||||| Sbjct 13809 CAGAAGGAGTCAACCCTTCACCTTGTGTTACGTCTCAGA 13847 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || ||||| || |||||||| || || ||| || ||| Sbjct 13175 CAAATTTTTGTCAAAACCCTTACCGGAAAGACCATCACCCTTGAAGTTGAACCATCTGAC 13234 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| || || || || || ||||| || ||||||||| Sbjct 13235 ACCATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAGGGTATCCCCCCAGACCAGCAA 13294 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || || ||||| || || |||||||| ||||| | || |||| |||| || ||| | Sbjct 13295 CGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGCAC-CTTGTCCGACTACAACAT 13353 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||| || || || || || ||| | || || Sbjct 13354 CCAGAAGGAGTCTACCCTTCATTTGGTCTT 13383 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || || || ||||| || ||||| || ||| || Sbjct 12947 CAGATCTTTGTGAAGACTTTGACCGGTAAGACCATCACTCTTGAGGTCGAGCCCTCTGAT 13006 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||||| || || || || || || |||||||| Sbjct 13007 ACGATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAGCAG 13066 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || || |||||||| | || ||| | || || ||| | Sbjct 13067 CGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTTTCTGACTACAACATT 13126 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || |||||||| ||| | ||| Sbjct 13127 CAGAAGGAGTCTACCCTCCATCTTGTCTTGCGTCTC 13162 >seq18 Length=974545 Score = 156 bits (172), Expect = 1e-32 Identities = 170/225 (76%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| ||||| || || ||||| |||||| | ||||||||| Sbjct 449444 AAAATGC---AGATCTTTGTGAAGACTCTTACGGGGAAAACCATCACCTTGGAGGTGGAA 449500 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||| ||||| || || || ||| ||||||||||||||| || ||||| |||||| Sbjct 449501 CCCTCAGATACCATTGAAAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCG 449560 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | ||||| |||||||| ||||| || ||||| | || || | ||| Sbjct 449561 GATCAGCAGCGTTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACACTGTCGGAT 449620 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || |||| || || || |||||||| || ||| | ||| Sbjct 449621 TACAATATCCAGAAGGAGAGCACCCTGCATCTCGTGTTGCGTCTC 449665 >seq7442 Length=2102 Score = 118 bits (130), Expect = 3e-21 Identities = 149/206 (72%), Gaps = 13/206 (6%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || |||||||| |||||| |||||||||| || || Sbjct 2014 CAAATCTTCGTGAAAAC----ACGGGAAAAACAATCACCTTCGAGGTGGAGCCTTCTGAT 1959 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| |||||||||| || |||| || || |||||| Sbjct 1958 ACCATCGAAAATGTTAAAGCTAAGATTCAGGGCA---------TCCCACCAGATCAGCAA 1908 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||| | | || || | ||||| || | Sbjct 1907 CGTTTAATTTTTGCTGGAAAGCAATTAGAAGATGCACGTACCCTCTCTGATTACAAAATT 1848 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| ||||| ||||||||||| Sbjct 1847 CAGAAAGAGTCAACGCTGCATCTTGT 1822 >seq67752 Length=654 Score = 107 bits (118), Expect = 5e-18 Identities = 97/122 (80%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || |||||||| ||||||||||||||||| || || Sbjct 130 CAAATCTTCGTGAAAAC----ACGGGAAAAACAATCACCCTCGAGGTGGAGCCTTCTGAT 75 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||||||||| ||||| || ||||| || || |||||| Sbjct 74 ACCATCGAAAATGTTAAAGCTAAGATTCAGGATAAAGAGGGCATCCCACCAGATCAGCAA 15 Query 178044 CG 178045 || Sbjct 14 CG 13 >seq60870 Length=785 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| ||||| || ||||| || || |||||||| | || || || ||||| Sbjct 606 AAGATTCAGGATAAAGAGGGCATCCCACCAGATCAGCAACGTTTAATTTTTGCTGGAAAG 665 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||||||| | || ||| | ||||| || | || ||||| |||||||||||| Sbjct 666 CAATTAGAAGATGGACGTACCCTTTCTGATTACAATATTCAGAAAGAGTCAACACTGCAT 725 Query 178125 CTTGTT 178130 |||||| Sbjct 726 CTTGTT 731 >seq7722 Length=1803 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| ||||| || ||||| || || |||||||| | || || || ||||| Sbjct 1 AAGATTCAGGATAAAGAGGGCATCCCACCAGATCAGCAACGTTTAATTTTTGCTGGAAAG 60 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | ||||||||| | || ||| | ||||| || | || ||||| |||||||||||| Sbjct 61 CAATTAGAAGATGGACGTACCCTTTCTGATTACAATATTCAGAAAGAGTCAACACTGCAT 120 Query 178125 CTTGTT 178130 |||||| Sbjct 121 CTTGTT 126 >seq64376 Length=716 Score = 102 bits (112), Expect = 2e-16 Identities = 96/122 (79%), Gaps = 4/122 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || |||||||| ||||||||||||||||| || || Sbjct 41 CAAATCTTCGTGAAAAC----ACGGGAAAAACAATCACCCTCGAGGTGGAGCCTTCTGAT 96 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||| || || ||| ||||||||||| ||||| || ||||| || || |||||| Sbjct 97 AACATCGAAAATGTTAAAGCTAAGATTCAGGATAAAGAGGGCATCCCACCAGATCAGCAA 156 Query 178044 CG 178045 || Sbjct 157 CG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202083643326244