Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phlebotomus_20papatasi_20[genbank_20GCA_5F000262795.1_202012-05-16] 106,826 sequences; 363,767,980 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18 132 4e-26 seq186 116 3e-21 seq165 102 8e-17 seq28036 96.9 3e-15 >seq18 Length=974545 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||| |||||||| |||||||||||||| || || || || || Sbjct 449674 GCCACCACGGAGACGCAACACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAATCCGA 449615 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || |||||||| ||||| || |||| ||||| || |||| || Sbjct 449614 CAGTGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGAGG 449555 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| | ||||||| || | | || || | |||| Sbjct 449554 AATTCCCTCCTTGTCC-TGAATCTTTGCTTTCACATTTTCAATGGTATCTGAGGGTTCCA 449496 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || || ||||| ||||| || ||||| || || |||||||| || Sbjct 449495 CCTCCAAGGTGATGGTTTTCCCCGTAAGAGTCTTCACAAAGATCTGCATTTT 449444 >seq186 Length=148488 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || || ||||| || || ||||||||||||||| ||||| || Sbjct 13170 CCACCACGGAGACGCAAGACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 13111 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || |||||||| || || ||||| ||||| ||||| | |||| Sbjct 13110 AGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGGGGA 13051 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | || | ||||| | | || || | ||| || Sbjct 13050 ATGCCCTCCTTATCC-TGAATCTTAGCCTTCACATTCTCAATCGTATCAGAGGGCTCGAC 12992 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| |||| ||||| || || |||||||| Sbjct 12991 CTCAAGAGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 12944 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || |||||||| |||| ||| || || ||||||||| ||||| |||||||| Sbjct 13399 GCCTCCACGGAGACGTAAGACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 13340 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || |||||||||||||| ||||| || || || || ||||| | ||| Sbjct 13339 CAAGGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 13280 Query 41755 AACGCTCTCCTTGTC 41769 | | |||||| || Sbjct 13279 GATACCCTCCTTATC 13265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| || || ||||| || Sbjct 13624 CCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATATTGTAGTCAGAC 13565 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || ||||| ||||| || |||| ||||||||||||| || Sbjct 13564 AGGGTACGACCATCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGGTCCGGTGGG 13505 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| ||| ||| ||| |||| ||| | ||| || | || ||| Sbjct 13504 ATCCCCTCCTTATCC-TGAATTTGGCCTTC-ACGTTTCAATAGTATCAGAAGGTTCGACC 13447 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || || ||||| || || ||||||||| Sbjct 13446 TCAAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAAAGATCTGCATG 13399 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||||||| || || || || ||||||||| ||||| ||||| ||||| || || Sbjct 13843 AGACGTAACACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGG 13784 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||| || ||||| || |||| ||||| || || | || | | ||| Sbjct 13783 CCATCTTCCAACTGTTTCCCGGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCC 13724 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | |||||| | ||| || || | || Sbjct 13723 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGAGGGCTCAACTTCGAGAGTA 13664 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || |||||||| Sbjct 13663 ATGGTCTTTCCAGTGAGGGTCTTGACAAAGATCTGCAT 13626 >seq165 Length=164173 Score = 102 bits (112), Expect = 8e-17 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| ||||| ||||| || ||||||||||||||||| || ||||| ||||| || | Sbjct 30354 AGACGCAACACGAGATGGAGGGTGCTCTCCTTCTGAATATTGTAGTCCGAGAGTGTATGG 30413 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || | |||||||| ||||| || ||||| ||||||| || | | || | |||| Sbjct 30414 CCATCCTTAAGCTGCTTTCCGGCAAAGATCAGATGCTGTTGATCTGGAGAAATTCCCTCC 30473 Query 41765 TTGTCCATGATTTTTTGC 41782 |||||| ||| | ||||| Sbjct 30474 TTGTCC-TGAATCTTTGC 30490 >seq28036 Length=10335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 || ||| |||||||| |||||||||||||| || || ||||| ||||| || || | || Sbjct 7697 TACCACGAGATGCAGGGTGCTCTCCTTCTGGATATTGTAGTCCGAGAGTGTACGGCCATC 7756 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | |||||| |||| || ||||| ||||| || |||| ||||| | ||| ||||| Sbjct 7757 CTCAACCTGCTTTCCGGAAAAGATCAGACGCTGCTGATCCGGAGGAACACCCTCATTGTC 7816 Query 41770 C 41770 | Sbjct 7817 C 7817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461686673911200