Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq209 466 2e-126 seq995 127 2e-24 >seq209 Length=133430 Score = 466 bits (516), Expect = 2e-126 Identities = 1190/1793 (66%), Gaps = 26/1793 (1%) Strand=Plus/Minus Query 52786 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 52845 ||| | |||| ||| || | |||||||||||| | | | || ||||| || |||| Sbjct 15051 TTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAA 14992 Query 52846 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT 52905 |||||||||||| ||||| || || | |||| | ||||| || || ||||| || Sbjct 14991 ATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTT 14932 Query 52906 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 52965 |||| | || || || | ||| || || | |||||| ||||| || ||||| || || Sbjct 14931 TCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACC 14872 Query 52966 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 53024 ||| || |||||||||| || | ||||| || |||||||||| || ||||| || Sbjct 14871 CCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAA 14812 Query 53025 CTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATAGATCCACCATCTACCATAA 53081 || | | || |||| || | | || | |||| |||||||| ||| | || | Sbjct 14811 ATCTC-TGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTA 14753 Query 53082 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141 | ||| || || || |||| |||||| | | | || ||| | ||||| | || Sbjct 14752 TAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGT 14693 Query 53142 GATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTAT 53198 |||| || ||||||||||||||||| ||||| ||| || ||||| || ||| Sbjct 14692 GATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAA 14636 Query 53199 ACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTG 53258 | ||||| | || |||||||| || | |||||| ||||| ||||| || ||||| |||| Sbjct 14635 ATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTG 14576 Query 53259 CCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAAT 53318 | | | ||| || | |||||| | || ||||| || || ||| ||| | Sbjct 14575 CTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGT 14516 Query 53319 TCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-G 53377 ||| | ||| || ||| ||||| ||| || | |||||| | Sbjct 14515 CCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTG 14456 Query 53378 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 53437 || |||| |||| || ||| ||| || ||||| || ||||||| || || || Sbjct 14455 GAC-TTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 53438 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG--TGCTTCCAGGC 53495 || || || || || || ||||| || || || || || | |||| |||| | | Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGTT-CAACTTGATAGCTTTCTCAC 14339 Query 53496 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 53555 | ||| ||||| | | | || ||| | ||| |||| |||||||| ||||| || | Sbjct 14338 TTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTA 14279 Query 53556 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 53615 | || ||||| || ||| ||| ||| ||||||||||| || ||| | || | ||| | Sbjct 14278 TGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAA 14219 Query 53616 TAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 53675 | ||||| || || ||| |||| |||| ||| || || | || ||||| | Sbjct 14218 TTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGA 14159 Query 53676 ATTGTCCATCT--ATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732 | | |||| ||| ||||||||||| | ||| || || |||| |||||| || || | Sbjct 14158 AAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAA 14099 Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 | |||| | | || | || || ||||| || ||||| || || || || || | Sbjct 14098 CTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGC 14039 Query 53793 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTAC 53852 | | ||||| |||||| || ||| | || || | |||||||| | ||| | || || | Sbjct 14038 CAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTC 13979 Query 53853 CAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT 53912 |||| || | || | ||||| ||| |||||||| | | | || |||| | | | Sbjct 13978 CAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACT-TGCTTA 13920 Query 53913 TGTATC-TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACA 53971 | | | |||||| ||| ||| | ||| | ||||||||| ||||||| |||| Sbjct 13919 ACAAACTTTTTTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCC-AACA 13861 Query 53972 TTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 | | || ||||| || |||| |||||||| | ||| | | ||| | | || Sbjct 13860 ATCTGAAAGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAAC 13801 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 54090 | ||||||||| | ||| || ||||||||||| ||| | ||||| | | ||| Sbjct 13800 CCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTC 13741 Query 54091 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 54150 || || |||||||| ||||| ||||| | ||| | | |||||| | |||||| ||||| Sbjct 13740 TTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTC 13681 Query 54151 CAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 54210 |||||| || | | | ||||| | || || || || ||||||| |||||||| || Sbjct 13680 CAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGT 13621 Query 54211 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGAT 54270 ||| ||||| ||||| |||||||| | | ||||| || | ||||| || || | || Sbjct 13620 GTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTAT 13561 Query 54271 ATAGCTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 ||| || | || | ||| | || || ||||||||| || || || ||| | Sbjct 13560 GTAGGACCCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGCTGATTTTG 13502 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | || | ||| ||| |||| | |||||||| || || || ||||| || || |||| Sbjct 13501 AAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCATAG 13442 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | || ||||| ||| | || | | ||| | ||| || | || ||| Sbjct 13441 CTATTAAGAAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGAC 13382 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || || ||||| |||||||||| | | ||||| || | ||| || | || | || Sbjct 13381 TTGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAACAT 13322 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | ||| ||||| | ||| || | ||| | ||| ||||| ||||| ||| Sbjct 13321 CTTCACCATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTCA 13269 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| || |||||||||||||| || ||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 54628 TGAAAAGTCTC 54638 ||| |||| Sbjct 13029 CTTAAAATCTC 13019 >seq995 Length=359585 Score = 127 bits (140), Expect = 2e-24 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || ||| ||| | ||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || ||||| ||||| |||||| ||||| ||||| || || || || |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 24331 |||||| |||||| || || | || ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||||||| |||||||| || | ||| || || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| |||||||||||| || ||||| || || || || ||||| || ||||| | | Sbjct 125690 TTCGATAAATCCACTTCTTCGACAGTCCAGAAAGACGCTTCAGCCTTCTTGTACATTTGC 125749 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 |||||||| | |||| ||| || || |||||||||| Sbjct 125750 CAGATGTCTGGGTATTTAATAGGGAAGATAACAAATC 125786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695743424320