Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3433 259 4e-64 seq286 111 1e-19 seq1176 86.0 5e-12 seq170 82.4 7e-11 >seq3433 Length=253125 Score = 259 bits (286), Expect = 4e-64 Identities = 599/896 (67%), Gaps = 25/896 (3%) Strand=Plus/Minus Query 105612 TACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGAC 105671 ||| |||||||| || ||||| ||||| |||||||| || | || || || || | ||| Sbjct 146628 TACTCCGGTCCACCCACGGCCATACATAGCGACGCCTACTACAATCTTCTTAGGGTTGAC 146569 Query 105672 GCCTTGTTTCAG-TAAC--GCATCG-ACAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGT 105727 ||||| || |||| | | | ||| || ||| || ||||| || | || | Sbjct 146568 ACCTTG----AGCTAACAAGTACTGTACACCGAAGTCAGTTGTGTACGTTTCCTTCGGAT 146513 Query 105728 TCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTT 105787 |||| || || || | || || || | || ||| || ||||| || || | Sbjct 146512 TCCACTCAGGTGCATATAATGAAGTCTGATGTCCTAAAGTATCATTGGACCAGGCACCCT 146453 Query 105788 TAAAATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTA 105847 | || |||||||||||||| ||||| | | | | | ||||| || | ||||| | Sbjct 146452 TGAAGTCGTAACTCATGAGGAATATGTGGTCCATGTAGTTTTGGGCAGCTTTGTAGTCGA 146393 Query 105848 CCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGG 105907 || ||||||||| | || || || ||||| ||| | |||||| | |||| | Sbjct 146392 TTACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAGTTCGTATTTCTTGCCCG 146333 Query 105908 TTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTT 105967 |||| | |||| || |||| |||||||||| | || ||| | | ||| |||| Sbjct 146332 TTTGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCATCAATATGACGTAAGTTT 146273 Query 105968 TGGCGTCACCGTC---CGCATCGCCCAACGACGGGTTAGCCCCTTTGCCGCCCGGAAACT 106024 ||||||| || ||| | | |||||| |||||||| || || |||| Sbjct 146272 ------CACCGTCTTTCGGGCTGCCGAGTTTCTCGTTAGCTCCTTTGCCTCCGGGGAACT 146219 Query 106025 CCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAAT 106084 |||| |||||||| | ||||||||| | |||||| | | || || ||||| | ||| Sbjct 146218 CCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAACTCCTTCGCTGAAG 146159 Query 106085 CTACAAAAACGTTTCTTTTTTCAACATCGTGCATAAAATAA----AATGGGTCTGATAGA 106140 | || ||| || ||| || ||| || ||| || || || || |||| || Sbjct 146158 CGACGAAACGGTGTCTCTT---AACTGGGT-CATCGAAGAAGAAGAAAGGATCTGCGAGG 146103 Query 106141 GTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATC 106200 |||||||| || || || || ||||| || |||| || | ||| ||| ||||||| Sbjct 146102 GTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTTCAACGCCATC 146043 Query 106201 AACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTT 106260 || || || ||||||||||| || || || ||||| | || | ||||| || || || Sbjct 146042 AATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTTCTGTGGCTTC 145983 Query 106261 TGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGAT 106320 || | |||||||| ||||| ||||| | || | || |||||||| || ||| || Sbjct 145982 TGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCCAGAGCATGAG 145923 Query 106321 CTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCG 106380 | |||||| | || || || || || || | ||| || || ||||| || Sbjct 145922 CGTTGCAACGCTTGGAAACTACCTTCGATTTCCTTCAAACTGTCATTGATGCCATCACCA 145863 Query 106381 CCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCT 106440 || ||||| || ||||| ||||| | || || | |||||| || | ||| || || Sbjct 145862 CCACAGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGGGACACGATCG 145803 Query 106441 ACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGCGACAATTTT 106496 || ||| | || ||| |||||| ||||| || ||||||||||| |||||| ||| Sbjct 145802 ACTGGATACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGCGCCGACAACTTT 145747 >seq286 Length=933739 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||||||||| || ||||| || || || ||| |||||| || Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| ||||| ||||| | ||| ||| || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAG 782115 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||| | || ||||| || ||||| || |||||| || | | ||| | || |||| Sbjct 782116 CAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTAT--CTGACTACA 782173 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||| || || ||||||||||| |||| || |||| | ||||| Sbjct 782174 ATATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATTGAGGGGAGG 782222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || |||||||| || || ||||| || ||| ||||| | Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| |||||| || ||||||||| | || ||| || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| || ||||||||||||||| ||| | ||||||||||| Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || ||||||||||| ||||| || Sbjct 379632 ATCCAGAAGGAATCCACTCTCCA 379654 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | ||||||||||| |||||||| || || ||| ||||| | Sbjct 780855 AATGCAGATCTTTGTGAAAACATTGACTGGCAAAACAATAACGCTAGAAGTAGAACCATC 780914 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| ||||| |||||| | || || || Sbjct 780915 GGATACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 780974 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| ||||||||||||| || || ||| |||||||| | | ||| | | |||||| Sbjct 780975 ACAGCGACTTATCTTTGCTGGAAAGCAATTGGAAGATGGGCGTACACTCT--CTGATTAC 781032 Query 29139 AATATTCAGAAGGAATCTAC 29158 ||||| || ||||||||||| Sbjct 781033 AATATCCAAAAGGAATCTAC 781052 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || || | ||||| | ||||| ||||||||||| || ||||| Sbjct 377397 AAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAACCG 377456 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || | || |||||| |||||||| ||| | || || Sbjct 377457 TCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTCCTCCCGAC 377516 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||| ||||| ||||| || || ||| |||||||| | || | ||||||| Sbjct 377517 CAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATTAT 377576 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||| ||||||||||| |||||| | || || || Sbjct 377577 AACATTCAAAAGGAATCTACCCTTCACTTAGTTTTGCG 377614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || |||||||| || || ||||| || || ||| ||| | Sbjct 378084 ATGCAAATCTTTGTGAAGACATTGACAGGAAAGACCATCACTTTGGAGGTGGAGCCCTCT 378143 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| || ||| || ||||||||| | || |||||| Sbjct 378144 GACACAATTGAGAACGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 378203 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || || ||||||||||||||| ||| | | || |||||| Sbjct 378204 CAGCGTCTGATCTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCAGACTACAAT 378263 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||||| ||||| || Sbjct 378264 ATTCAGAAGGAATCCACTCTCCA 378286 >seq1176 Length=404280 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||| ||||| | ||| |||| || |||||| | || ||||| || ||| Sbjct 385059 AAAATTCAAGATAAGGAAGGCATTCCCCTAGACCAGCAAAGATTGATTTTTGCAGGAAAA 385118 Query 29106 CAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 || || |||||| || | | ||| | || ||||||||||| || || |||||||||| Sbjct 385119 CAGCTAGAAGATGGTCGCACATTAT--CTGACTACAATATTCAAAAAGAGTCTACTCTTC 385176 Query 29164 ACATGGTGTTACGATTACGAGGAGG 29188 | |||| || |||| | ||||| Sbjct 385177 ATTTGGTCTTGAGATTGTGGGGAGG 385201 >seq170 Length=994537 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25936 GCACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGA 25995 ||| || || ||||||||||| | ||||||| | ||||| |||||||| || || Sbjct 674290 GCATGGTTTCCACGTGCACGAGTTCGGCGACAACACGAACGGCTGCACGTCCGCGGGCCC 674231 Query 25996 GCACTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGG 26055 |||||| || ||||| || |||| |||||||| ||| || | ||||| || || Sbjct 674230 GCACTTCAACCCCACGAAGCAGGAGCACGGCGCCCCCAGCGCCAGCGTGAGGCACGTGGG 674171 Query 26056 CGACTTGGGCAACAT 26070 |||| | |||||||| Sbjct 674170 CGACCTCGGCAACAT 674156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428317812318020