Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3433 242 3e-59 seq170 114 1e-20 seq2177 104 2e-17 seq286 95.1 1e-14 seq2618 91.5 1e-13 >seq3433 Length=253125 Score = 242 bits (268), Expect = 3e-59 Identities = 485/716 (68%), Gaps = 7/716 (1%) Strand=Plus/Minus Query 102323 TTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGA 102382 |||||||| || ||||| || |||||||||||||||||||| | || | | | |||| Sbjct 146468 TTGGACCAGGCACCCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCATGTAGTTTTGG 146409 Query 102383 GCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGC 102442 || || | ||| | | || ||| ||||| |||| | ||| || || || || Sbjct 146408 GCAGCTTTGTAGTCGATTACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAGT 146349 Query 102443 TCGTACGTCTTGTTCGTTTGCAGCTGCAGTTCGTCCAGCATGGCGCGCAACTCTTTCAGC 102502 ||||| ||||| |||||| || | ||||| | ||| |||||| |||||||| | Sbjct 146348 TCGTATTTCTTGCCCGTTTGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCATC 146289 Query 102503 AAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTG 102562 || | | ||| || || |||| | || ||||||| | ||| || || ||| Sbjct 146288 AATATGACGTAAGTTTCACCGTCTTTCGGGC---TGCCGAGTTTCTCGTTAGCTCCTTTG 146232 Query 102563 CCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAAC 102622 || || || |||||||| |||||||| | ||||| || | ||||| | | ||| Sbjct 146231 CCTCCGGGGAACTCCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAAC 146172 Query 102623 TCTTTAACGGATTCGACAAACACGCGCCGCTTGTCCGCGTCGTGCATGAAATAGAACGGG 102682 || || | || |||| || | | | ||| | | ||| | | ||| |||| || Sbjct 146171 TCCTTCGCTGAAGCGACGAAACGGTGTCTCTTAACTGGGTCATCGAAGAAGAAGAAAGGA 146112 Query 102683 TCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTG 102742 || | || |||||||| ||||| || || || || ||||||| || | || | || Sbjct 146111 TCTGCGAGGGTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTTC 146052 Query 102743 GCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTT 102802 ||||||||| ||||| || ||||||||||| || || ||||| | || | || || Sbjct 146051 AACGCCATCAATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTTC 145992 Query 102803 TGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCT 102862 || ||||| || | |||||||| || || || || | ||| |||||||| |||| || Sbjct 145991 TGTGGCTTCTGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCCA 145932 Query 102863 TTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGC 102922 ||| ||||| |||| ||||| ||||| || || ||| | ||| || | Sbjct 145931 GAGCATGAGCGTTGCAACGCTTGGAAACTACCTTCGATTTCCTTCAAACTGTCATTGATG 145872 Query 102923 CCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGC 102982 || || || || || |||||||||||||| || |||||||| | | || || | || Sbjct 145871 CCATCACCACCACAGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGGG 145812 Query 102983 ACTTTGTCCACCGGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATACGCG 103036 || || || ||| | ||||| |||||||||||| || || || |||||| Sbjct 145811 ACACGATCGACTGGATACTTTCGCGG--GTACACGCCCCATTCGACAAAGTACGCG 145758 >seq170 Length=994537 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||| |||||||| ||||| | | | |||| ||| |||||||| ||| || Sbjct 674158 GTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCCTGCTTCGT 674217 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 |||||| |||||| ||| ||||||||||||||||| || |||||||||| |||||||| Sbjct 674218 GGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAACTCGTGCAC 674277 Query 23931 GTGAAAACCGTGC 23943 ||| ||||| ||| Sbjct 674278 GTGGAAACCATGC 674290 >seq2177 Length=268633 Score = 104 bits (114), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 || |||||||| ||||||| ||||| |||||| | | ||||||| ||||||||| Sbjct 252175 GGGGGCGTGGGTTTGAACCTCTGCGGCGCTAACCACCTGCTACTGCTGGACCCGCACTGG 252116 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCGC 38848 |||||||| | ||| ||||||||| ||||||||| ||||| |||| |||| |||| | Sbjct 252115 AACCCGCAGCTGGAGGAGCAGGCGCAGGACCGCATCTACCGCGTGGGGCAGACCAAGCCC 252056 Query 38849 ACGTACGTGTACA--AGATGATTGTT 38872 | || | |||| |||| ||||| Sbjct 252055 GTGCACATATACAGGTGATGCTTGTT 252030 >seq286 Length=933739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | ||| || ||||| || ||||| ||||||| Sbjct 378082 CCACCTCTCAGACGAAGGACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 378023 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || ||| | || |||||||| ||||| ||| Sbjct 378022 AGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGG 377963 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| || || ||| || | | | || || |||||| Sbjct 377962 ATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGAAGGCTCCACC 377903 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || || |||||||||||||| Sbjct 377902 TCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 377856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | ||| || ||||| || ||||| ||||||| Sbjct 379906 CCACCTCTCAGACGAAGGACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 379847 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || ||| | || |||||||| ||||| ||| Sbjct 379846 AGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGG 379787 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| || || || || | | | || || ||||||| Sbjct 379786 ATGCCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAGGGCTCCACC 379727 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || || |||||||||||||| Sbjct 379726 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379680 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | || || ||||| || ||||| ||||||| Sbjct 378538 CCACCTCTCAGACGAAGGACAAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAG 378479 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || ||||| || || ||| | || |||||||| ||||| ||| Sbjct 378478 AGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGG 378419 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| ||| || | | | || || ||||||| Sbjct 378418 ATACCCTCTTTGTCCTGAATCTTGGCTTTGACATTCTCAATTGTGTCCGAGGGCTCCACC 378359 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || || |||||||||||||| Sbjct 378358 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 378312 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | ||| || ||||| ||||||||||| || | Sbjct 379222 CCACCTCTCAGACGAAGGACTAGATGGAGAGTAGATTCCTTCTGAATGTTATAATCGGAG 379163 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || |||||||| || ||| | ||||| | ||| ||||| || Sbjct 379162 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGA 379103 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| ||||| || || | | | || || ||||||| Sbjct 379102 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATTGTGTCCGAGGGCTCCACC 379043 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || || |||||||||||||| Sbjct 379042 TCCAAAGTGATGGTCTTTCCTGTCAATGTCTTTACAAATATTTGCAT 378996 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| || || || |||||||| || ||||| || | || || | | || Sbjct 781295 AGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGAAAGAGTGCGTCCATCT 781236 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| ||||||||||||||||||| || | |||||||| || Sbjct 781235 TCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCCTTATCT 781176 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||||| | | | ||| || || || ||||| || || ||| Sbjct 781175 TGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCAACTTCCAATGTGATTGTC 781116 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| || || ||||| || ||||| Sbjct 781115 TTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | || || ||||| ||||||||||| || | Sbjct 377854 CCACCTCTCAGACGAAGGACTAGATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAG 377795 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || || |||||||| || ||| | ||||| | ||| ||||| || Sbjct 377794 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGA 377735 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| || ||||| || ||| ||| || | | | || ||| ||||| | Sbjct 377734 ATGCCCTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTGTCAGAAGGCTCTACT 377675 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || ||||| || || || | || |||||||| ||||||||| Sbjct 377674 TCCAATGTGATGGTTTTACCAGTCAGGGTCTTGACAAAAATTTGCATT 377627 >seq2618 Length=201275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| || | |||||| ||||| || ||||| ||||| | Sbjct 161630 CCTCCACGAAGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAA 161689 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||| ||||| || || | || | | ||| ||||| || Sbjct 161690 AGAGTACGGCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGA 161749 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || ||||| | ||| ||| || | |||| Sbjct 161750 ATTCCTTCCTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACC 161809 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | ||| |||||||| || |||| ||||| || || || |||||||| || Sbjct 161810 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCATTTTCAA 161862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422241270346544