Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3433 291 7e-74 seq286 111 1e-19 seq1176 86.0 5e-12 >seq3433 Length=253125 Score = 291 bits (322), Expect = 7e-74 Identities = 703/1054 (67%), Gaps = 14/1054 (1%) Strand=Plus/Minus Query 97295 ATAATCTACAACACCGTCCTCCCACGTGCCCGA-CACCGGCCCGTTGCCAGTGCCGGAAA 97353 ||| || ||||| ||||||| ||| || ||| || | || || || | | || || | Sbjct 146712 ATAGTCCACAACGCCGTCCTGCCATGTTCCCTTGCAAGGTCCTGTCGCAACT-CCAGAGA 146654 Query 97354 AATAGTTGCCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGCGACGC 97413 | || || | |||||| ||| |||||||| || ||||| ||||| ||||||| Sbjct 146653 AGGGATTACCCTCTTTATAATCGTGTACTCCGGTCCACCCACGGCCATACATAGCGACGC 146594 Query 97414 CCACAATTATTTTGTTGGGATCGACGCCTTGTTCCAGTAACGCATCGACAGCGTAATGTG 97473 | || | || || || || | ||| ||||| | | || | ||| || | | | Sbjct 146593 CTACTACAATCTTCTTAGGGTTGACACCTTGAGCTAACAAGTACTGTACACCGAAGTCAG 146534 Query 97474 TAGTGTACAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAAT 97533 | |||||| || | || ||||| || || || | || || || | || ||| Sbjct 146533 TTGTGTACGTTTCCTTCGGATTCCACTCAGGTGCATATAATGAAGTCTGATGTCCTAAAG 146474 Query 97534 CCGTGTTTGACCAAGCCCCTTTAAAATCGTAAGTCATGAGAAATATTTTGTCTAATGACT 97593 || ||||| || || || || |||||| ||||||| ||||| | ||| | | | Sbjct 146473 TATCATTGGACCAGGCACCCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCATGTAGT 146414 Query 97594 TTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTG 97653 |||| || | ||||| | || ||||||||| |||| || || ||||| || Sbjct 146413 TTTGGGCAGCTTTGTAGTCGATTACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATG 146354 Query 97654 TTAATTCGTAAACCCTGCCGGTTTGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCAT 97713 | | |||||| | |||| ||||| | | |||| || ||||||||||||||| | Sbjct 146353 TGAGTTCGTATTTCTTGCCCGTTTGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTT 146294 Query 97714 CCAACAACAGAATGTATGTTTTGGCGTCACGCTCCGCATCGCCCAGCGACGGGTTAGCCC 97773 || ||| | | ||| |||| |||| || | | ||| || | |||||| | Sbjct 146293 TCATCAATATGACGTAAGTTTCACCGTCTT--TCGGGCT-GCCGAGTTTCTCGTTAGCTC 146237 Query 97774 CTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTCCACACTTGCA 97833 ||||||| || || || ||||| |||| ||||| ||| ||||| | |||||| | | | Sbjct 146236 CTTTGCCTCCGGGGAACTCCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAA 146177 Query 97834 AAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTCGTGCATGAAATAGA 97893 || ||||| | || | || ||| || ||| || | ||| | | ||| ||| Sbjct 146176 GGAACTCCTTCGCTGAAGCGACGAAACGGTGTCTCTTAACTGGGTCATCGAAGAAGAAGA 146117 Query 97894 ACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTA 97953 | || || | || |||||||| || || || || ||||| || | || || | ||| Sbjct 146116 AAGGATCTGCGAGGGTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTT 146057 Query 97954 ATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGC 98013 |||| |||||||||||| || |||||||||||||| ||||| ||||| | || | | Sbjct 146056 GTTTCAACGCCATCAATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTC 145997 Query 98014 CCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGC 98073 | || || || || || | |||||||| ||||| || || | || | || ||||||| Sbjct 145996 CTTTCTGTGGCTTCTGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGC 145937 Query 98074 GTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGT 98133 | || ||| || ||||||| |||| ||||| || ||| || | ||| | Sbjct 145936 GCCCAGAGCATGAGCGTTGCAACGCTTGGAAACTACCTTCGATTTCCTTCAAACTGTCAT 145877 Query 98134 TTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCA 98193 | || ||||| ||||| ||||| || ||||| || || | || || | |||||| || | Sbjct 145876 TGATGCCATCACCACCACAGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAA 145817 Query 98194 AGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAG 98253 ||| || || || ||| | | ||| |||||| ||||| |||||||||||||| Sbjct 145816 TGGGGACACGATCGACTGGATACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGCGC 145757 Query 98254 CGACAATTTTATCC-----TCTCTTCTGCCGGGTTTGTTGTTTTCCAGC-CATGTGTATT 98307 |||||| ||| ||| ||| || || || ||| |||||| || | | || |||| Sbjct 145756 CGACAACTTT-TCCAGACGTCTGTT-TGAACGGCTTG-TGTTTTTCACCTAAGGTATATT 145700 Query 98308 CGAGCGGCGCCAGATGACCGCCGTCGGTGTCTGC 98341 | | |||| | ||| | ||| ||||| || || Sbjct 145699 CTAAGGGCGGTAAATGGCTGCCATCGGTATCAGC 145666 >seq286 Length=933739 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||||||||| || ||||| || || || ||| |||||| || Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| ||||| ||||| | ||| ||| || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAG 782115 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 |||||| | || ||||| || ||||| | |||||| || | | ||| | || |||| Sbjct 782116 CAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTAT--CTGACTACA 782173 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||| || ||||||||||| |||| || |||| | ||||| Sbjct 782174 ATATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATTGAGGGGAGG 782222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | ||||||||||| |||||||| || || ||| ||||| | Sbjct 780855 AATGCAGATCTTTGTGAAAACATTGACTGGCAAAACAATAACGCTAGAAGTAGAACCATC 780914 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| ||||| |||||| | || || || Sbjct 780915 GGATACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 780974 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 ||| ||||||||||||| || || |||||||||||| | | ||| | | |||||| Sbjct 780975 ACAGCGACTTATCTTTGCTGGAAAGCAATTGGAAGATGGGCGTACACTCT--CTGATTAC 781032 Query 25212 AATATTCAAAAGGAATCTAC 25231 ||||| |||||||||||||| Sbjct 781033 AATATCCAAAAGGAATCTAC 781052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || || | ||||| | ||||| ||||||||||| || ||||| Sbjct 377397 AAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAACCG 377456 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | || |||||| |||||||| ||| | || || Sbjct 377457 TCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTCCTCCCGAC 377516 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||||| ||||| ||||| || || |||||||||||| | || | ||||||| Sbjct 377517 CAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATTAT 377576 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || ||||||||||||||||| |||||| | || || || Sbjct 377577 AACATTCAAAAGGAATCTACCCTTCACTTAGTTTTGCG 377614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||||||||| | || |||||||| || || ||||| || ||| ||||| | Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | ||||| |||||| || ||||||||| | || ||| || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || |||||||| || |||||| |||||||| ||| | ||||||||||| Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || || |||||||| ||||| || Sbjct 379632 ATCCAGAAGGAATCCACTCTCCA 379654 >seq1176 Length=404280 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||| ||||| | ||| |||| || |||||| | || ||||| || ||| Sbjct 385059 AAAATTCAAGATAAGGAAGGCATTCCCCTAGACCAGCAAAGATTGATTTTTGCAGGAAAA 385118 Query 25179 CAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 || | |||||| || | | ||| | || |||||||||||||| || |||||||||| Sbjct 385119 CAGCTAGAAGATGGTCGCACATTAT--CTGACTACAATATTCAAAAAGAGTCTACTCTTC 385176 Query 25237 ACATGGTGTTACGATTACGAGGAGG 25261 | |||| || |||| | ||||| Sbjct 385177 ATTTGGTCTTGAGATTGTGGGGAGG 385201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410779357054376