Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3433 178 1e-39 seq286 109 5e-19 seq1176 87.8 2e-12 >seq3433 Length=253125 Score = 178 bits (196), Expect = 1e-39 Identities = 333/487 (68%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 21581 GCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCG 21640 || ||||||||||||||||| ||||||| | || ||| || ||||| || || Sbjct 145759 GCGTACTTTGTCGAATGGGGCGTGTACCCGCGAAAGTATCCAGTCGATCGTGTCCCCATT 145818 Query 21641 CCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAAC 21700 || ||| || | ||| | ||||| |||||| | ||||| || || || || |||||||| Sbjct 145819 CCTAATTTAACTCATCTGCTATATGGCTTCATCCCGATCTGTGGTGGTGATGGCATCAAT 145878 Query 21701 GACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGG 21760 ||| | || | || ||||| | || |||||||| || || | || || Sbjct 145879 GACAGTTTGAAGGAAATCGAAGGTAGTTTCCAAGCGTTGCAACGCTCATGCTCTGGGCGC 145938 Query 21761 GCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGC 21820 | || || | |||| | || || ||||| |||||||| | || ||||| || || || Sbjct 145939 GAAGACTTTACGGTGTCGATTCATGATCCCTGGGCCGCTTTGCAGAAGCCACAGAAAGGA 145998 Query 21821 GTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGG 21880 |||| || ||||| ||||| ||||||||||| || || ||| ||||||| |||| Sbjct 145999 CTCTCTTCCTGGAATGAACCTTACAAAGGCAATTTCGGCCAATTGATGGCGTTGAAACAA 146058 Query 21881 GCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCATTT 21940 |||| ||| | | || | || |||| || || || ||||| || | ||||| ||| Sbjct 146059 GCCAGGCCTGATTTGAAGATTCTCCCATCTATTGGTGGCTGGACCCTCGCAGATCC-TTT 146117 Query 21941 TATCATATGC-ACGACGCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAAGAATTTCT 21999 || | | | | ||| | | |||| || ||| ||||| | || || || Sbjct 146118 CTTCTTCTTCGATGACCCAGTTAAGAGACACCGTTTCGTCGCTTCAGCGAAGGAGTTCCT 146177 Query 22000 GCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGCAAGGG 22059 || || ||||| | | |||||| || ||||||| |||||||| ||||| ||||| || Sbjct 146178 TCTAACCTGGAAAATGTTTGACGGTCTCGACATCGACTGGGAGTTCCCCGGAGGCAAAGG 146237 Query 22060 AGCCAAC 22066 ||| ||| Sbjct 146238 AGCTAAC 146244 >seq286 Length=933739 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--AT 118584 || || || || | ||| |||||||| || || || ||||| | |||| | ||| || Sbjct 781751 AATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATC--TGATAGAGTACGTCCAT 781694 Query 118585 CCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT 118644 |||| | || ||||| ||| |||| |||||||||||||| ||||| || || ||||||| Sbjct 781693 CCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTGT 781634 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || | || | |||||| | || | || || || | || | Sbjct 781633 CTTGGATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGT-TCAACTTCTAAAGTGATT 781575 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||| ||| || |||||||||||||| Sbjct 781574 GTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GC 118569 |||||| | |||||||| ||||| || | ||||||||||||||||| ||||| || | Sbjct 782223 ACCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGA 782164 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || ||||| ||| || ||||||||||| || | || | | ||||| || || | Sbjct 782163 TAAT-GTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGG 782105 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | ||||| ||||| ||| |||||| || || | || | |||||| | || | || Sbjct 782104 GAATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGT-TCC 782046 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || ||||| || | ||||| || ||||| ||||| Sbjct 782045 ACTTCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||| | ||||| || ||||||||||| |||||| | || | ||| Sbjct 377612 CAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATC 377553 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || ||||| || | || || | ||||| |||||||| || ||||| || || Sbjct 377552 TTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATC 377493 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||||| ||||| | || ||||| | || | || Sbjct 377492 TTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGT 377433 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || |||||||| |||||||||||||| Sbjct 377432 TTTACCCGTAAGAGTTTTCACAAAAATCTGCAT 377400 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| || || || || || || ||||| ||| | |||||| ||| || Sbjct 379432 ACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCC 379373 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| |||||| |||| ||||||||||| || ||||| |||||||| ||||| | Sbjct 379372 AGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGA 379313 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||||||| ||| ||||| | || | || || Sbjct 379312 ATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTT 379253 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| || ||||| Sbjct 379252 CCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||||| | | |||||||| | |||||||| || || |||||||| || Sbjct 380134 CCGCCGCGTAGACGAAGTACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAA 380075 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| || || ||||| ||||| |||| ||||||||||| || ||||| Sbjct 380074 AGAGTGCGACCATCTTCTAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 380015 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || ||||| |||||| || || | || | ||||||| ||||| Sbjct 380014 ATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACT 379955 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || |||| || || ||||| || ||||| Sbjct 379954 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAAGATTTGCAT 379908 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| || || || || ||||| ||||| || | |||||| ||| || Sbjct 378292 ACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAGAGAGTGCGACCATCTTCC 378233 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| |||||| |||| |||||||||||||| ||||| || || || |||||| | Sbjct 378232 AGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGA 378173 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||| | | ||| ||||| | || | || || Sbjct 378172 ATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACCTCCAAAGTGATGGTCTTT 378113 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| || ||||| Sbjct 378112 CCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--AT 118584 || || || || | ||| |||||||| || || || ||||| | |||||| || || Sbjct 781979 AATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATC--TGATAGTGTACGGCCAT 781922 Query 118585 CCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT 118644 |||| | || ||||| ||| |||| |||||||||||||| ||||| || || ||||| | Sbjct 781921 CCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTAT 781862 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || | || | ||| || | || | || || || | || | Sbjct 781861 CTTGGATTTTAGCCTTCACATTCTCAATGGTATCTGATGGT-TCCACTTCTAAAGTAATA 781803 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || | ||||| || ||||| ||||| Sbjct 781802 GTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| || || || || || || ||||||||| | |||||| ||| || Sbjct 379660 ACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAGAGAGTGCGACCATCTTCC 379601 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| ||||| |||| ||||||||||| || ||||| || || || ||||| | Sbjct 379600 AGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTGA 379541 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | ||||||| ||||| || | || | || || Sbjct 379540 ATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTTC 379481 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| || ||||| Sbjct 379480 CCTGTCAATGTCTTCACAAATATTTGCAT 379452 >seq1176 Length=404280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GC 118569 |||||| | |||||||| ||||| || | ||||||||||||||||| ||||| || | Sbjct 385202 ACCTCCCCACAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGA 385143 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || ||||| ||| || ||||||||||| || | || | | ||||| || | | Sbjct 385142 TAAT-GTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTAGGG 385084 Query 118630 GTATGCCCTCCTTGTCTGTAATTTT 118654 | ||||| ||||| ||| |||||| Sbjct 385083 GAATGCCTTCCTTATCTTGAATTTT 385059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811979018928