Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2862 123 4e-23 seq286 116 6e-21 seq1176 96.9 5e-15 >seq2862 Length=892093 Score = 123 bits (136), Expect = 4e-23 Identities = 156/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 10483 AATTTATTGATAT---TGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAG 10539 |||||||| |||| | |||||| || || || ||||| |||||||| || || |||| Sbjct 103799 AATTTATTTATATATTTTCAGCTGGTGTTATAGATGAAGACTATAGAGGCAACGTAGGAG 103858 Query 10540 TAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTC 10599 || | ||||| ||||| ||| | |||||||| | | || | ||| || |||||| | | Sbjct 103859 TAGTTTTATTCAATCACTCTGACCAAGATTTTGTTGTTAAAAAAGGTGACAGAATAGCCC 103918 Query 10600 AATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAA 10659 || |||| ||||||| |||| || || ||| | |||| | | | |||| |||| Sbjct 103919 AACTAATTTGTGAAAGGATTTACTACCCAAAACTTGAGGAAGTTGCAAATCTATCTGAAA 103978 Query 10660 CAAAAAGATCTGATTTTGGTTTTGGATCTACTGG 10693 |||| ||| ||| ||| |||||||||||||| Sbjct 103979 CAAATAGAGGCGATGGTGGCTTTGGATCTACTGG 104012 >seq286 Length=933739 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| |||||||| |||||||| || ||||||||||| ||| Sbjct 781310 CCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGAA 781251 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| ||||||||||| | ||| ||||| || ||||| Sbjct 781250 AGAGTGCGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGG 781191 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| ||| ||||| ||| ||| Sbjct 781190 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCAACT 781131 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||||||||| || || ||||| || |||| || || ||||| Sbjct 781130 TCCAATGTGATTGTCTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || | ||| || |||||||| | |||||| ||||| ||||| || || || Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGAT 782163 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| |||| |||||||| |||||||||||||||||||| || || ||| Sbjct 782162 AATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGA 782103 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| || ||||| ||| ||| Sbjct 782102 ATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACT 782043 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || || || ||||||||||| | ||| |||||||| Sbjct 782042 TCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | |||||||| || ||||||||||| ||||||||||| ||| Sbjct 781538 CCACCTCTCAAACGCAGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCAGAA 781479 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| Sbjct 781478 AGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGGG 781419 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 781418 ATTCCTTCCTTATCTTG 781402 Score = 102 bits (112), Expect = 1e-16 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | || || || || | |||||||| ||| || || |||||||| Sbjct 377628 TTCCACCACGAAGACGCAAAACTAAGTGAAGGGTAGATTCCTTTTGA-ATGTTATAATCG 377570 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || || || | ||| || ||||| ||||| |||||||| | |||||||| || ||| Sbjct 377569 GAGAGGGTCCTTCCATCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGA 377510 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || ||||||||||| Sbjct 377509 GGAATACCCTCTTTATCTTG 377490 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | |||||| ||||| | || || ||||| |||||||||||||| Sbjct 781994 CCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGAT 781935 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || ||||| ||||| || || || | | |||||||| ||||| Sbjct 781934 AGTGTACGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 781875 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| |||||||| ||| ||| Sbjct 781874 ATACCTTCCTTATCTTGGATTTTAGCCTTCACATTCTCAATGGTATCTGATGGTTCCACT 781815 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || || || || ||||||||||| | ||| |||||||| Sbjct 781814 TCTAAAGTAATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| ||||| || |||||||| || ||||| ||||| || Sbjct 781082 CCACCTCTCAAACGCAGTACTAAATGCAATGTAGATTCCTTTTGGATATTGTAATCAGAG 781023 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| ||||||||||| || | || || || || ||||| Sbjct 781022 AGTGTACGCCCATCTTCCAATTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCAGGAGGG 780963 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||||| || ||||||| Sbjct 780962 ATACCTTCCTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTATCCGATGGTTCTACT 780903 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || |||||||| || || |||||||| | || || |||||| Sbjct 780902 TCTAGCGTTATTGTTTTGCCAGTCAATGTTTTCACAAAGATCTGCATT 780855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| ||||||||||| || || || || || ||||||||||| | | ||| || Sbjct 380117 TACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCATCTTC 380058 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || |||||| |||||||| |||| | ||||| || ||||| || |||||||| || || Sbjct 380057 TAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTG 379998 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | |||||| ||||| | || || ||||| |||||||||||||| Sbjct 781766 CCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGAT 781707 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||||| ||||| || || || | | |||||||| ||||| Sbjct 781706 AGAGTACGTCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 781647 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 781646 ATACCTTCCTTGTCTTG 781630 >seq1176 Length=404280 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146062 TCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCT 146121 ||| || |||||||| | |||||| ||||| ||||| || || || | || | | Sbjct 385190 TCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAATGTGCGACC 385131 Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| |||| |||||||| |||||||||||||||||||| || | ||||| ||||| || Sbjct 385130 ATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTAGGGGAATGCCTTCCTT 385071 Query 146182 ATCTTG 146187 |||||| Sbjct 385070 ATCTTG 385065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743494019425280