Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq286 131 1e-25 seq2763 127 2e-24 seq2618 107 2e-18 >seq286 Length=933739 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | || || || || ||| |||||||| || ||||||||| Sbjct 379450 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 379391 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||||||||| || ||||| |||| ||||| ||||| ||||| Sbjct 379390 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 379331 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| |||||| |||||| ||| || | | | ||||| | ||||||| Sbjct 379330 ATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACC 379271 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||||||||| |||||||| Sbjct 379270 TCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | || || || || ||| ||||||||||| |||||||| Sbjct 378310 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAG 378251 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||||||||| || ||||| |||| ||||| || || ||||| Sbjct 378250 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 378191 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| || ||| || | | | |||| ||||||| Sbjct 378190 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACC 378131 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| |||||||||||||||||||| Sbjct 378130 TCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| | || ||||||||| ||||||||||| || |||| | || || Sbjct 380117 TACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCATCTTC 380058 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 |||||||| || || || |||| ||||| ||||| ||||| | ||| || |||||| Sbjct 380057 TAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTG 379998 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| ||| || | | | ||||| | || || |||| || || ||||| Sbjct 379997 AATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTT 379938 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||||||||| Sbjct 379937 CCCTGTCAATGTCTTCACAAAGATTTGCAT 379908 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | || || || || ||| |||||||| || ||||| ||| Sbjct 379678 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAG 379619 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||||||||| || || || |||| ||||| ||||| ||||| Sbjct 379618 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 379559 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || |||||| |||||| ||| || | | | ||||| | || || Sbjct 379558 ATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACT 379499 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||||||||| |||||||| Sbjct 379498 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379452 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | || || || || ||| |||||||| || |||||||| Sbjct 378766 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCCGAG 378707 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||||||||| || ||||| |||| ||||| ||||| ||||| Sbjct 378706 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGAGGA 378647 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || ||||| ||| || ||| || | | | ||||| | || || Sbjct 378646 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 378587 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||| ||||| |||||||| Sbjct 378586 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTACAAATATTTGCAT 378540 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || |||| | || || || || ||||| || || Sbjct 378046 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 377987 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| | ||||||||| || || | || || |||||| |||||| || || | Sbjct 377986 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTC 377927 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||||||||||| || || ||||| || |||| ||||||||| Sbjct 377926 TCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACA 377867 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 377866 AATATTTGCAT 377856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || |||| | || || || || ||||| || || Sbjct 378502 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 378443 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| | ||||||||| || || | |||||| |||||| ||| || || || | Sbjct 378442 ATCAGTCTCTGTTGGTCAGGGGGGATACCCTCTTTGTCCTGAATCTTGGCTTTGACATTC 378383 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||||||||||| || || ||||| || |||| ||||||||| Sbjct 378382 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 378323 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 378322 AATATTTGCAT 378312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||| || ||| || |||| | || || || ||||| || || || Sbjct 379186 TCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAG 379127 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| ||||| | ||||| |||||| ||| || ||| || | Sbjct 379126 ATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTC 379067 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||||||||||| || || ||||| || |||| ||||| ||| Sbjct 379066 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTTACA 379007 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 379006 AATATTTGCAT 378996 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || |||| | || || || || ||||| || || Sbjct 379870 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 379811 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| | ||||||||| || || | || || |||||| |||||| ||| || | Sbjct 379810 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATTTTAGCCTTGACGTTC 379751 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||||||||||| || || ||||| || |||| ||||||||| Sbjct 379750 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 379691 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 379690 AATATTTGCAT 379680 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||| || ||| || |||| | || || || ||||| || || || Sbjct 377818 TCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAG 377759 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||||||||| ||||| | ||||| |||||| ||||||| ||||| Sbjct 377758 ATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATTTTTGCTTTAACGTTT 377699 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | ||| || |||| || || || || || ||||| ||||| ||| Sbjct 377698 TCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGTTTTACCAGTCAGGGTCTTGACA 377639 Query 45326 AAGATTTGCAT 45336 || |||||||| Sbjct 377638 AAAATTTGCAT 377628 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || |||| | || || ||||| ||||| || || Sbjct 378958 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGTTGCTTTCCTGCAAAG 378899 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| | ||||||||| || || | || || |||||| ||| || ||| || | Sbjct 378898 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTC 378839 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||||||||||| || || ||||| || |||| ||||||||| Sbjct 378838 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 378779 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 378778 AATATCTGCAT 378768 >seq2763 Length=379199 Score = 127 bits (140), Expect = 2e-24 Identities = 325/491 (66%), Gaps = 19/491 (4%) Strand=Plus/Minus Query 13178 ATACGCCCATGAAGCTGCTCGAGTCAAGAGTTTTCACAACTGGCCCCGTTGTATGAAGCA 13237 ||||||| || || ||||| | || |||| | | |||||||| ||||| || Sbjct 319903 ATACGCCTCAGAGGCGGCTCGCCTACGGACTTTTGCCGATTGGCCCCGAAGTATGCGTCA 319844 Query 13238 GAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAA 13297 | ||| || | ||||||| || |||||||| ||||| || | || || || || || Sbjct 319843 AAAACCAGAAGAACTGGCGGAAGCGGGTTTCTTTTACACGGGACAGGGCGATAAAACTAA 319784 Query 13298 GTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACA 13357 || |||| || || ||||| || ||||| ||||| || || |||||||||||||| Sbjct 319783 ATGTTTCTTCTGCGATGGCGGCTTAAAAGACTGGGAAAATGATGACGTACCTTGGGAACA 319724 Query 13358 GCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGCTAGTCAAGGGTAGAGACTACGT 13417 ||| | | ||||| || ||||| || ||||||||||| || ||| | || ||||| Sbjct 319723 GCACGCGCGTTGGTTTTCGCGATGCGCTTATGTTCAGCTAGTGAAAGGTCGTGAATACGT 319664 Query 13418 ACAGAAAGTCATCACGGAAGCCTGC-----GTGTTACCCGGTGAGAACACTACCGTGTCA 13472 ||||| || | || ||| || | | | | |||| | | || Sbjct 319663 TCAGAAGGTTGCTTCTGAGGCC-GCAACAACTACTGCACCCAAAGAAAAGGATTCATCCA 319605 Query 13473 ACAGCC-----GCGCCAGTGTCC-GAGCCTATACCTGAGACAAAAATTGAAAAAGAG--- 13523 | | || || || ||| | | || | | ||| ||||||||| Sbjct 319604 ATAACCTGGTAGCACC----TCCTGCGAATAACACGAATTCAAGCTCGGAAAAAGAGGAA 319549 Query 13524 CCCCAAGTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGC 13583 ||| ||||| ||||||||| |||| |||||||| | || |||||| | | |||||| Sbjct 319548 ACCCCCGTGGAGGATTCGAAATTGTGTAAGATATGTTTCGCCGAAGAGAGGAACGTGTGT 319489 Query 13584 TTCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGT 13643 ||||| || ||||||||||| ||||| ||||| || || || ||| ||||| || Sbjct 319488 TTCGTGCCCTGCGGTCACGTAGTGGCTTGTGCAAAATGCGCTTTGTCGACTGATAAATGC 319429 Query 13644 CCGATGTGTCG 13654 || ||||| || Sbjct 319428 CCTATGTGCCG 319418 Score = 122 bits (134), Expect = 7e-23 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944 ||||| | ||| |||| || || || || ||||| || || ||| | ||||| ||| Sbjct 320229 GAAGAGGAGCGCCTGAAAACATTCGATAAATGGCCAGTTTCCTTTCTATCGCCTGAACTT 320170 Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004 | |||| |||||| |||||||| | ||| | | ||||| |||||||| || |||||| Sbjct 320169 CTCGCTAGAAATGGATTTTACTATCTCGGTCGTGGGGACGAAGTGCGTTGCGCCTTTTGT 320110 Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064 || |||||||||||| | ||| | || ||||| || || ||| || ||| | ||| Sbjct 320109 AAGGTGGAGATAATGAGATGGGACGAAGGCGACGACCCAGCTAAAGATCATCAACGATGG 320050 Query 13065 GCTCCCCAATGTCCGTTTGTGA 13086 || || |||||||| ||| ||| Sbjct 320049 GCACCGCAATGTCCTTTTCTGA 320028 >seq2618 Length=201275 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||| |||||||||||| || || | || ||| Sbjct 161648 ACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCCTCC 161707 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| || ||||| ||||| ||||||||||| ||||| | || |||||||| Sbjct 161708 AATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGG 161767 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| | |||||||||| | ||| || ||||| Sbjct 161768 ATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTA 161827 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || || || ||||| ||||| || Sbjct 161828 CCCGTTAGGGTTTTTACGAAGATCTGCATTTT 161859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395058424613164