Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq209 453 1e-122 seq995 123 3e-23 >seq209 Length=133430 Score = 453 bits (502), Expect = 1e-122 Identities = 1194/1805 (66%), Gaps = 42/1805 (2%) Strand=Plus/Minus Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083 ||| | |||| ||| || | |||||||||||| | | | || ||||| || |||| Sbjct 15051 TTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAA 14992 Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 |||||||||||| ||||| || || | |||| | ||||| || || |||| || Sbjct 14991 ATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTT 14932 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 |||| | || || || | ||| || || | |||||| ||||| || ||||| || || Sbjct 14931 TCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACC 14872 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AA 62262 ||| || |||||||||| || | ||||| || |||||||||| || ||||| || Sbjct 14871 CCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAA 14812 Query 62263 CTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTACCATAA 62319 || || | | |||| || | | || | |||| ||||| || ||| | || | Sbjct 14811 ATCTCTGATT-TCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTA 14753 Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 | ||| || || || |||| |||||| | | | || ||| | ||||| | || Sbjct 14752 TAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGT 14693 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTAT 62436 | || || ||||| ||||||||||| ||||| ||| || ||||| || ||| Sbjct 14692 GATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAA 14636 Query 62437 ACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTG 62496 | ||||| | || |||||||| || | |||||| ||||| ||||| || ||||| |||| Sbjct 14635 ATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTG 14576 Query 62497 CCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAAT 62556 | | | ||| || | |||||| | || ||||| || || ||| ||| | Sbjct 14575 CTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGT 14516 Query 62557 TCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-G 62615 ||| | ||| || ||| | |||||||| ||| || | |||||| | Sbjct 14515 CCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTG 14456 Query 62616 TACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCT 62675 || |||| |||| || |||| ||| || ||||| || |||| || || || || Sbjct 14455 GACT-TCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 62676 AATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT--GCTTCCGGGC 62733 || || || || || || |||||||| || || || || | |||| |||| | | Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGTTCAA-CTTGATAGCTTTCTCAC 14339 Query 62734 TATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62793 | ||| ||||| | | | || ||| | ||| |||| |||||||| ||||| || | Sbjct 14338 TTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTA 14279 Query 62794 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62853 | || ||||| || ||| ||| ||| ||||||||||| || ||| | || | ||| | Sbjct 14278 TGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAA 14219 Query 62854 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913 | ||||| || |||||| |||| |||| ||| || || | || ||||| | Sbjct 14218 TTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGA 14159 Query 62914 ATCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTA 62970 | |||| ||| ||||||||||| | ||| | || |||| |||||| || || | Sbjct 14158 AAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAA 14099 Query 62971 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 | |||| | | || | || || ||||| || ||||| || || || || || | Sbjct 14098 CTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGC 14039 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | | ||||| |||||| || ||| | || || | |||||||| | ||| | || || | Sbjct 14038 CAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTC 13979 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-----TTA- 63144 |||| || | |||| ||||| ||| |||||||| | | | || |||| ||| Sbjct 13978 CAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACTTGCTTAA 13919 Query 63145 -TAGATTTGTATCTCCTT--TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTC 63201 | ||| | ||| || | | |||| ||||| | ||| ||||| |||| Sbjct 13918 CAAACTTTTTTTCTTGTTCATATTTTTCATATAGCTT---------TTCAAACTCTTCTC 13868 Query 63202 CCCAAACATTGTCCAA-TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63260 ||| |||| | | || | ||| || |||| |||||||| | ||| | | ||| Sbjct 13867 CCC-AACAATCTGAAAGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTT 13809 Query 63261 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTT 63320 | | || | ||||||||| | ||| || ||||||||||| ||| | ||||||| Sbjct 13808 TTTTCAACCCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCA 13749 Query 63321 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63380 | ||| || || |||||||| ||||| ||||| | ||| | | |||||| | |||| Sbjct 13748 CGGACTTCTTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGC 13689 Query 63381 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63440 || ||||||||||| || || | | ||||| | || || || || ||||||| ||| Sbjct 13688 CATGGTTCCAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATAT 13629 Query 63441 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63500 ||||| ||||| ||||| ||||| |||||||| | | || || || | ||||| || Sbjct 13628 CTAGCTGTGTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTT 13569 Query 63501 CCGGAGATATAGCCTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGC 63559 || | || ||| || | || | ||| | || || ||||||||| || || || Sbjct 13568 CCAGCTATGTAGGACCCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGC 13510 Query 63560 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATC 63619 ||| || || | ||| ||| |||| | || ||||| || ||||| || || || || Sbjct 13509 TGATTTTGAAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTC 13450 Query 63620 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAA 63679 |||| | || ||||| ||| | || | | | ||| | ||| || | Sbjct 13449 TTTCATAGCTATTAAGAAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAG 13390 Query 63680 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63739 || ||| || || ||||| |||||||||| | | ||||| || | || || | Sbjct 13389 TGTTGGACTTGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGC 13330 Query 63740 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 || | ||| ||| ||||| | ||| || | ||| | ||| ||||| ||||| || Sbjct 13329 ATCAACATCTTCACCATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTC 13270 Query 63800 AACAA 63804 | ||| Sbjct 13269 AGCAA 13265 >seq995 Length=359585 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || ||| ||| | |||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || ||||| || || ||| || ||||| ||||| || || ||||| |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778 |||||| ||| || || || | || ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||||||| |||||||| || | ||||| || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| |||||||||||| || ||||| || || || || ||||| || ||||| | | Sbjct 125690 TTCGATAAATCCACTTCTTCGACAGTCCAGAAAGACGCTTCAGCCTTCTTGTACATTTGC 125749 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 |||||||| | |||| || ||||| |||||||||| Sbjct 125750 CAGATGTCTGGGTATTTAATAGGGAAGATAACAAATC 125786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629790171443520