Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq209 453 1e-122 seq995 118 1e-21 >seq209 Length=133430 Score = 453 bits (502), Expect = 1e-122 Identities = 1187/1793 (66%), Gaps = 26/1793 (1%) Strand=Plus/Minus Query 64817 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 64876 ||| | |||| ||| || | |||||||||||| | | | || ||||| || |||| Sbjct 15051 TTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAA 14992 Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 |||||||||||| ||||| || || | |||| | ||||| || || |||| || Sbjct 14991 ATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTT 14932 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 |||| | || || || | ||| || || | |||||| ||||| || ||||| || || Sbjct 14931 TCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACC 14872 Query 64997 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 65055 ||| || |||||||||| || | ||||| || |||||||||| || ||||| || Sbjct 14871 CCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAA 14812 Query 65056 CTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTGCCATAA 65112 || | | || |||| || | | || | |||| ||||| || ||| | || | Sbjct 14811 ATCTC-TGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTA 14753 Query 65113 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 65172 | ||| || || || |||| |||||| | | | || ||| | ||||| | || Sbjct 14752 TAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGT 14693 Query 65173 GATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTAT 65229 |||| || ||||||||||||||||| ||||| ||| || ||||| || ||| Sbjct 14692 GATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAA 14636 Query 65230 ACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTG 65289 | ||||| | || |||||||| || | |||||| ||||| ||||| || ||||| |||| Sbjct 14635 ATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTG 14576 Query 65290 CCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAAT 65349 | | | ||| || | |||||| | || ||||| || || ||| ||| | Sbjct 14575 CTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGT 14516 Query 65350 TCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-G 65408 ||| | ||| || ||| ||||| ||| || | |||||| | Sbjct 14515 CCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTG 14456 Query 65409 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 65468 || |||| |||| || ||| ||| || ||||| || ||||||| || || || Sbjct 14455 GAC-TTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 65469 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG--TGCTTCCAGGC 65526 || || || || || || ||||| || || || || || | |||| |||| | | Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGTT-CAACTTGATAGCTTTCTCAC 14339 Query 65527 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 65586 | ||| ||||| | | | || ||| | ||| |||| |||||||| ||||| || | Sbjct 14338 TTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTA 14279 Query 65587 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 65646 | || ||||| || ||| ||| ||| ||||||||||| || ||| | || | ||| | Sbjct 14278 TGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAA 14219 Query 65647 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 65706 | ||||| || |||||| |||| |||| ||| || || | || ||||| | Sbjct 14218 TTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGA 14159 Query 65707 ATCGCTCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 65763 | | |||| ||| ||||||||||| | ||| | || |||| |||||| || || | Sbjct 14158 AAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAA 14099 Query 65764 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 65823 | |||| | | || | || || ||||| || ||||| || || || || || | Sbjct 14098 CTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGC 14039 Query 65824 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 65883 | | ||||| |||||| || ||| | || || | |||||||| | ||| | || || | Sbjct 14038 CAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTC 13979 Query 65884 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 65943 |||| || | |||| ||||| ||| |||||||| | | | || |||| | | | Sbjct 13978 CAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACT-TGCTTA 13920 Query 65944 TGTATC-TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 66002 | | | |||||| ||| ||| | ||| | ||| ||||| ||||||| |||| Sbjct 13919 ACAAACTTTTTTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCC-AACA 13861 Query 66003 TTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 66061 | | || ||||| || |||| |||||||| | ||| | | ||| | | || Sbjct 13860 ATCTGAAAGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAAC 13801 Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTC 66121 | ||||||||| | ||| || ||||||||||| ||| || ||||| | | ||| Sbjct 13800 CCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTC 13741 Query 66122 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 || || |||||||| ||||| ||||| | ||| | | |||||| |||||| ||||| Sbjct 13740 TTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTC 13681 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 66241 |||||| || || | | ||||| | || || || || ||||||| |||||||| || Sbjct 13680 CAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGT 13621 Query 66242 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 66301 ||| ||||| ||||| |||||||| | | ||||| || ||||| || || | || Sbjct 13620 GTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTAT 13561 Query 66302 ATAGCTTCCACTTGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAG 66360 ||| || | || | ||| | || || ||||||||| || || || ||| | Sbjct 13560 GTAGGACCCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGCTGATTTTG 13502 Query 66361 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420 | || | ||| ||| |||| | |||||||| || || || ||||| || || |||| Sbjct 13501 AAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCATAG 13442 Query 66421 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 66480 | || ||||| ||| | || | | ||| | ||| || | || ||| Sbjct 13441 CTATTAAGAAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGAC 13382 Query 66481 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 66540 || || ||||| |||||||||| | | ||||| || | || || | || | || Sbjct 13381 TTGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAACAT 13322 Query 66541 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 | ||| ||||| | ||| || | ||| | ||| ||||| ||||| ||| Sbjct 13321 CTTCACCATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTCA 13269 >seq995 Length=359585 Score = 118 bits (130), Expect = 1e-21 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || ||| ||| | ||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || ||||| ||||| |||||| ||||| ||||| || || || || |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 36354 |||||| ||| || || || | | ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||||||| |||||||| || | ||| || || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || |||| |||||||||||| || ||||| || || || || ||||| || ||||| | | Sbjct 125690 TTCGATAAATCCACTTCTTCGACAGTCCAGAAAGACGCTTCAGCCTTCTTGTACATTTGC 125749 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 36740 |||||||| | |||| ||| || || |||||||||| Sbjct 125750 CAGATGTCTGGGTATTTAATAGGGAAGATAACAAATC 125786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658144136574560