Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq209 459 4e-124 seq995 118 2e-21 >seq209 Length=133430 Score = 459 bits (508), Expect = 4e-124 Identities = 1078/1611 (67%), Gaps = 36/1611 (2%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||| || | |||||||||||| | | | || ||||| || |||| |||||||||||| Sbjct 15039 CTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAAATAGTACATTCC 14980 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| || || | |||| | || || || || |||| || |||| | || Sbjct 14979 TGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTTTCCATAATTAGG 14920 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 || || | ||| || || | |||||| ||||| || ||||| || ||||| || ||||| Sbjct 14919 TTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACCCCTATCAGCAGC 14860 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 78946 ||||| || | ||||| || |||||||||| || ||||| || || | | || | Sbjct 14859 CATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAAATCTC-TGATTT 14801 Query 78947 CTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 ||| || | | || | |||| ||||| || ||| | || || ||| || | Sbjct 14800 CTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTATAAGATTTTTCA 14741 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | ||||||| |||||| | | | || ||| | ||||| | || |||| || |||| Sbjct 14740 TGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGTGATTGACCACTT 14681 Query 79064 GAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCG 79120 ||||||||||||| ||||| ||| || ||||| || ||| ||||||| | | Sbjct 14680 GAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAAATGGTTCAAATG 14624 Query 79121 ATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAAC 79180 |||||||||| || | |||||| ||||| |||||||| ||||| ||||| | | ||| Sbjct 14623 ATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTGCTAGTAGTAATG 14564 Query 79181 TATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATC 79238 || | |||||| || | || ||||| || || ||| ||| ||||| | ||| Sbjct 14563 AGTTACGAAGACC--ATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGTCCCACAAATC 14506 Query 79239 AGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGT 79298 || || || ||| | ||||||||||| ||| || | ||| || |||| Sbjct 14505 TGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTGGACTTCCTTC 14446 Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 || || ||| ||| || || || || | ||||| || || || || || || || Sbjct 14445 ATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCCAAGGCGCCATA 14386 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG--TGCTTCTAGGCTATCAAATGGA 79416 || || ||||| || || || || | | |||| |||| || ||| ||||| Sbjct 14385 GTATATTGTTTCAAATAT-TTGTTGGT-TCAACTTGATAGCTTTCTCACTTTCATATGGA 14328 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 | | | || ||| | ||| |||| |||||||| ||||| || || || ||||| Sbjct 14327 ATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTATGGGCCTATGC 14268 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 || ||| || ||| ||||||||||| || ||| | || | ||| || ||||| || Sbjct 14267 CTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAATTATTTTGTTA 14208 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT 79596 ||||| ||||| |||| ||| || |||| || ||||| || | |||| Sbjct 14207 AGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGAAAGTTTTATCT 14148 Query 79597 --ATT-ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 ||| ||||||||||| | || | || |||| |||||| || || || |||| | Sbjct 14147 TCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAACTTCATCTGAT 14088 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 | || | || |||||||| ||||| || || || || || || || | ||||| | Sbjct 14087 GATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGCCAAGATTTTTT 14028 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 ||||| || ||| | || || | |||||||| | ||| |||| || ||||| || | Sbjct 14027 TGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTCCAGTCTCCACT 13968 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA------TTATAGACTTGTAT 79827 |||| ||||| ||| |||||||| | | | || |||| | | | ||| Sbjct 13967 TGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACTTGCTTAACAAACT----- 13913 Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 | |||||| ||| |||| | ||||| ||| ||||| ||||||||| ||| Sbjct 13912 -TTTTTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCCAACAATCTGAA 13854 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTC 79947 | ||||| || || | |||||||| | ||| | | | | | | || | |||| Sbjct 13853 AGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAACCCTTTTC 13794 Query 79948 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 ||||| | ||| || ||||||||||| ||| | ||||| | | || || || Sbjct 13793 ATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTCTTCTTTC 13734 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 |||||||| ||||| ||||| | ||| | | |||||| | |||||| ||||||||||| Sbjct 13733 CCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTCCAAGTAA 13674 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 || || | | || |||| || || || || ||||||| |||||||| ||||| ||| Sbjct 13673 ATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGTGTTGTTA 13614 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 || ||||| |||||||| | | ||||| || ||||| || || | || ||| Sbjct 13613 TATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTATGTAGGAC 13554 Query 80188 CCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || | || | ||| | || || ||||||||| || || || ||| || || | Sbjct 13553 CCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGCTGATTTTGAAATCAT 13495 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT 80297 ||| ||| |||| | |||||||| || || || || || || || |||| Sbjct 13494 TGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCAT 13444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 ||| ||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 ||| |||| || || | || |||| | ||| | ||||| Sbjct 13029 CTTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTT 12985 >seq995 Length=359585 Score = 118 bits (130), Expect = 2e-21 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||| ||| || ||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || ||||| ||||| ||||| ||||| ||||| || || || || |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 50156 ||| || ||| || || || | || ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||||||| |||||||| || | ||||| || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718237519393760