Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2618 93.3 3e-14 seq286 93.3 3e-14 >seq2618 Length=201275 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | |||| || | |||| ||||| || | ||||| ||||| Sbjct 161630 CCTCCACGAAGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAA 161689 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||||||||| || || || ||||| |||||||| || | || Sbjct 161690 AGAGTACGGCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGA 161749 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || | | | |||||| |||||| || Sbjct 161750 ATTCCTTCCTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACC 161809 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || ||||| ||||| || || || ||||||||| Sbjct 161810 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCATTTTC 161860 >seq286 Length=933739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| |||| ||||| || | |||||||||||| | || || | || ||| Sbjct 379660 ACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAGAGAGTGCGACCATCTTCC 379601 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| || ||||| |||| ||||| || || | || | ||||||||| || ||| Sbjct 379600 AGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTC-CTG 379542 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 || | ||||| | ||| |||||| || ||||| || | || || || || Sbjct 379541 AATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTT 379482 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || |||||||| |||||||| Sbjct 379481 CCCTGTCAATGTCTTCACAAATATTTGCAT 379452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381353406570072