Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq209 421 9e-113 seq995 118 1e-21 >seq209 Length=133430 Score = 421 bits (466), Expect = 9e-113 Identities = 1167/1780 (66%), Gaps = 24/1780 (1%) Strand=Plus/Minus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 ||| || | ||| || ||||| | | | || | ||| || |||| ||||||||| || Sbjct 15039 CTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAAATAGTACATTCC 14980 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 |||||| || || | |||| | ||||| || || |||| || ||| |||| Sbjct 14979 TGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTTTCCATAATTAGG 14920 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | ||||| || | || || ||||| || ||||| || ||||| || ||||| Sbjct 14919 TTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACCCCTATCAGCAGC 14860 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 71029 ||||| || | ||||| || |||||||||| || ||||| || || || | | | Sbjct 14859 CATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAAATCTCTGATT-T 14801 Query 71030 CTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 ||| || | | || | |||| ||||| || ||| | || || |||||| | Sbjct 14800 CTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTATAAGATTTTTCA 14741 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | ||||||| |||||| | | | || ||| | ||||| | || |||| || |||| Sbjct 14740 TGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGTGATTGACCACTT 14681 Query 71147 GAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATACGGTTCCACTG 71203 ||||||||||||| ||||| ||| || ||||| || ||| | ||||| | || Sbjct 14680 GAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAAATGGTTCAAATG 14624 Query 71204 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGAC 71263 | |||||||| || | |||||| ||||| ||||| || ||||| ||||| | | || Sbjct 14623 ATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTGCTAGTAGTAATG 14564 Query 71264 TATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCG 71323 || | |||||||| | ||||| || || ||| ||| | ||| | ||| | Sbjct 14563 AGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGTCCCACAAATCTG 14504 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383 ||||| || || | ||| || |||| ||| Sbjct 14503 ATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTGGACTTCCTTCAT 14444 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || ||| ||| ||||| || || ||||||| || || || || || ||||| | Sbjct 14443 AAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCCAAGGCGCCATAGT 14384 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT--GCTTCCGGGCTATCAAATGGATA 71501 | || ||||| || || | | || | |||| |||| | || ||| ||||| Sbjct 14383 ATATTGTTTCAAATATTTGTTGGTTCAA--CTTGATAGCTTTCTCACTTTCATATGGAAT 14326 Query 71502 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | | | || ||| | ||| |||| |||||||| ||||| || || || || || || Sbjct 14325 ACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTATGGGCCTATGCCT 14266 Query 71562 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 ||| || ||| ||||||||||| || ||| | || | ||| || ||||| || || Sbjct 14265 AAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAATTATTTTGTTAAG 14206 Query 71622 ATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT-- 71679 |||| ||||| |||| ||| || |||| || ||||| || | |||| Sbjct 14205 ATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGAAAGTTTTATCTTC 14146 Query 71680 ATTA-CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 71738 |||| |||||| ||| | || | || |||| |||||| || || || |||| | Sbjct 14145 ATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAACTTCATCTGATGA 14086 Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 | || | || ||||||||| || ||||| || || || || || || | ||||| ||| Sbjct 14085 TGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGCCAAGATTTTTTTG 14026 Query 71799 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858 ||| || ||| | || || | |||||||| | || |||| || ||||| || | || Sbjct 14025 ATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTCCAGTCTCCACTTG 13966 Query 71859 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC 71918 || ||||| ||| |||||||| | | | || |||| | || | | ||||| Sbjct 13965 AGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACTTGCTTAACAAACTTTTTTTC 13906 Query 71919 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAG 71977 | ||| |||| | ||||| ||| ||||| ||||||||| || | | || |||| Sbjct 13905 TTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCCAA-CAATCTGAAAGGCCAG 13847 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | || |||| |||||||| | ||| | | | | | | || | ||||||||| | Sbjct 13846 GGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAACCCTTTTCATAAATA 13787 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 72097 ||| || ||||||||||| ||| | ||||| | | || || || ||||||| Sbjct 13786 AATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTCTTCTTTCCCTGTAT 13727 Query 72098 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 72157 | ||||| ||||| | ||| | | |||||| | |||||| ||||||||||| || || | Sbjct 13726 TTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATAGCAA 13667 Query 72158 TAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | || || | || || || || ||||||| |||||||| ||||| ||||| |||| Sbjct 13666 ATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGTGTTGTTATATACTC 13607 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 | |||||||| | | ||||| || | ||||| || || | || ||| || | | Sbjct 13606 TTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTATGTAGGACCCTTTAG 13547 Query 72278 CACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | | || | || || || ||||||||| || || || ||| || || | ||| || Sbjct 13546 CCCTTATACAATG-TACATG-TAGACCTATACCACCAGCTGATTTTGAAATCATTGCACA 13489 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 72395 | |||| | |||||||| || || || ||||| || || |||| | || ||||| Sbjct 13488 TTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCATAGCTATTAAGAAACA 13429 Query 72396 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 ||| | || | | ||| | ||| || | || ||| || || ||||| Sbjct 13428 AGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGACTTGCATGTGTAAA 13369 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTAT 72515 |||||||||| | | ||||| || | || || | || | ||| |||||| Sbjct 13368 GTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAACATCTTCACCATGTAT 13309 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 ||| | || || | ||| | ||||||||| ||||| ||| Sbjct 13308 TCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTCA 13269 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| ||||||||||||| ||| || ||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 ||| |||| || || | || |||||| ||| | ||||| Sbjct 13029 CTTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTT 12985 >seq995 Length=359585 Score = 118 bits (130), Expect = 1e-21 Identities = 160/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||| ||| | ||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || || ||||| |||||| ||||| ||||| || || || || |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 |||||| ||| || || || | | ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||||||| |||||||| || | ||||| || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109971887840