Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq209 145 1e-29 seq1226 95.1 2e-14 seq2684 93.3 6e-14 seq1676 87.8 3e-12 >seq209 Length=133430 Score = 145 bits (160), Expect = 1e-29 Identities = 322/478 (67%), Gaps = 4/478 (1%) Strand=Plus/Plus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 ||||| || || | ||||| ||||||||||| | ||| | ||| | |||| ||| | Sbjct 14560 AACTCATTACTACTAGCACCCATGCCCACGGCATCTACTGCACAAATTCTTGGTAATAAT 14619 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 ||||| |||||||| || || |||||||| || || ||||| |||||||| ||| Sbjct 14620 GAATCATTTGAACCATTTACTTCAAACATTTATCAAAGACGTGTATTATCTGGAGAATTT 14679 Query 97905 CAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGAC 97964 ||| || ||| |||||| || | || ||| || || | ||| | || ||| Sbjct 14680 CAAGTGGTCAATCACCACTTGCTTAGGGATTTGACACAAGCAGATTTATGGGATGAAGAC 14739 Query 97965 ATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATC-ATCCCGGA 98023 ||| | | || || |||||||||| || |||||||| | || | | || || | Sbjct 14740 ATGAAAAATCTTATAATACACAACAATGGTTCTATTCAAAATA-TAGAAGCAATACCTAA 14798 Query 98024 AGAGTTGCGCAGA-ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATA 98082 ||| | | ||| | || ||||| || ||||| || | ||||| || | | Sbjct 14799 AGAAAT-CAGAGATTTGTATAAGACAGTTTGGGAAATATCAGTTAAGACAACAATTCAAA 14857 Query 98083 TGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCG 98142 ||||||| || || |||| | ||||||||| || ||||| ||||| | | ||||| | Sbjct 14858 TGGCTGCTGATAGGGGTGCATTCATTGACCAAAGCCAATCTTTCAACATTCATGTTGCTG 14917 Query 98143 AGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGA 98202 | || | || | | || || ||||||||||| || ||||| | ||| || || | Sbjct 14918 AACCTAATTATGGAAAGTTAACATCAATACACTTTTATGCTTGGAAAATGGGACTGAAAA 14977 Query 98203 CGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 | || ||||||||| | | ||||| | || | ||||| || | ||| || || || Sbjct 14978 CAGGAATGTACTATTTACGCACAAAACCAGCTGCTAATGCAATTCAATTCACAGTTGA 15035 >seq1226 Length=256684 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 126757 ATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATT 126816 |||||||| || | | |||||||||||||| || || || |||||||||||||| | Sbjct 63858 ATGCCGCTAGGATTCATTGCGCTCTTGTCTCCAGGCACAGTATTTTTGTTGCAAGCAACA 63799 Query 126817 CTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACTGCGCAAATCC 126876 ||||||| ||| | ||| | ||| || ||||||| | || ||| | | | |||| Sbjct 63798 CTGCACACTTCCAAGATTCTCTCGGCGCGTGCTCCACTTAACCCAACATTCCTTACATCC 63739 Query 126877 ACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGA 126913 |||| || | ||| || |||||||| || |||| || Sbjct 63738 ACTAAGATTAAATGTACGTCGGTACCACCGGTGGCGA 63702 >seq2684 Length=525127 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 70202 GATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCA 70261 || || || || ||||||| || |||| || |||| | | |||||||| ||| Sbjct 127234 GACAGAAGAATTTTAATGTGTTCTTGGATACCATCAGACCTAAGTAAGATGGCACTTCCA 127175 Query 70262 CCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTAT 70321 || || || || || ||||| ||| | || | ||| ||| | || || | | || Sbjct 127174 CCTTGCCATTGCTTAGCTCAATTTCATGTGTCTGCTGGTAAACTTTCCTGTCTTTTATAC 127115 Query 70322 CAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTG 70381 || |||||||| |||||||| || ||||| || ||||| ||||| || ||| | || | Sbjct 127114 CAAAGGAGTGCAGACATGGGTCTTGGTGTGCCATTTAATATTGCCAGTTATGCCATCCTA 127055 Query 70382 ACGCACATGATTGCTCACATTACCGGCCT 70410 || || ||||||||||| || || || || Sbjct 127054 ACACATATGATTGCTCATATAACTGGACT 127026 >seq1676 Length=605919 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| || ||||| ||||| ||| || | || ||||| || || ||||| |||| Sbjct 110616 TGGCCAGTGGAGTACATAATATACTTCGCTGCGTTCCCGAGCGCGCTGACCGGCTCCGAC 110675 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 || | |||||||| | ||||| || ||| | ||||| ||||| | || ||| | Sbjct 110676 CTGGCGATATTCGCGGGCTGCTTCGCGTACCTCGCCGACGTGTCCTCGCTGAGGAACAGG 110735 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 ||||| | || || || |||| || || ||||||||||| ||||| || || | ||| Sbjct 110736 ACGCTGAGGGTCGGGATACTGGACGCAGTGTACCTGAGCACCATGCCCACGGGCATCGCG 110795 Query 50315 ATCGGT 50320 | ||| Sbjct 110796 CTTGGT 110801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741026926871840