Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq286 131 1e-25 seq2618 120 2e-22 >seq286 Length=933739 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 |||||||| |||||||| || || ||||| ||||| |||||| || | || | ||| Sbjct 377611 AAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATCT 377552 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || || || | || | | ||| |||||| ||||| || ||||| || Sbjct 377551 TCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATCT 377492 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| ||| |||||| |||| || || || ||| || ||||| |||||||| Sbjct 377491 TGAATTTTAGCT-TTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGT 377433 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||| || |||||||| |||||||| ||||| || Sbjct 377432 TTTACCCGTAAGAGTTTTCACAAAAATCTGCATCTT 377397 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | |||||||| || ||||| || || || || ||||| || Sbjct 378766 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCCGAG 378707 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | |||||| |||||| | |||| ||| || ||||| ||| Sbjct 378706 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGAGGA 378647 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| ||| ||| | || || || || | ||| || Sbjct 378646 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 378587 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||||| || |||||||| ||||||||| Sbjct 378586 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTACAAATATTTGCATA 378539 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | |||| ||| ||||| || || || || ||||| |||||| Sbjct 377854 CCACCTCTCAGACGAAGGACTAGATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAG 377795 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| ||||| | || | ||| |||||||| ||| Sbjct 377794 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGA 377735 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || |||||||| |||||| ||| || || |||| || || || | ||||| Sbjct 377734 ATGCCCTCTTTGTCCTGAATTTTTGCT-TTAACGTTTTCAATTGTGTCAGAAGGCTCTAC 377676 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| ||||| || || |||||||||||||| Sbjct 377675 TTCCAATGTGATGGTTTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 377628 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | |||||||| || ||||| || || || || ||||||||| Sbjct 379678 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAG 379619 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | |||||| ||||| | |||| ||| || ||||| || Sbjct 379618 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 379559 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| || | || || || || | ||| || Sbjct 379558 ATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACT 379499 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||||| || || ||||| ||||||||| Sbjct 379498 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCATA 379451 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | |||||||| | || || || ||||| || |||||||| Sbjct 781082 CCACCTCTCAAACGCAGTACTAAATGCAATGTAGATTCCTTTTGGATATTGTAATCAGAG 781023 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| ||||| || ||||| | || | || |||||||| || Sbjct 781022 AGTGTACGCCCATCTTCCAATTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCAGGAGGG 780963 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 || ||||| || || ||| || ||||||| |||| |||||||| | || |||||| Sbjct 780962 ATACCTTCCTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTATC-CGATGGTTCTAC 780904 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || ||||| || |||| ||||| ||||| || ||||| Sbjct 780903 TTCTAGCGTTATTGTTTTGCCAGTCAATGTTTTCACAAAGATCTGCAT 780856 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||||||| || || |||||||| || || |||||||| || ||||| || | Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGAT 782163 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||||| || || | ||||| | ||| ||||| ||| Sbjct 782162 AATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGA 782103 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || |||||| ||| ||| | || ||||| || ||| || Sbjct 782102 ATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACT 782043 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || || || | ||||| || |||||||||||| Sbjct 782042 TCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCATA 781995 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | |||||||| || ||||| || || || || ||||| || Sbjct 378310 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAG 378251 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | |||||| |||||| | |||| ||| || || || ||| Sbjct 378250 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 378191 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| ||| || | || || || || || || Sbjct 378190 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACC 378131 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||||| || || ||||| ||||||||| Sbjct 378130 TCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCATA 378083 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || || || |||||||| || ||| | | | ||||||| |||||| ||| Sbjct 380104 GTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCATCTTCTAGTTGTTTACCA 380045 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | |||| ||| || ||||| || || ||||||||||| |||||| ||| Sbjct 380044 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTGAATTTTAGCCTTG 379985 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || || || || | ||| || || || || ||||| || ||||||| || Sbjct 379984 ACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTTCCCTGTCAATGTC 379925 Query 15347 TTTACAAAAATTTGCATA 15364 || ||||| ||||||||| Sbjct 379924 TTCACAAAGATTTGCATA 379907 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | ||| |||||||| || || || ||||| || || || ||||| | Sbjct 781994 CCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGAT 781935 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || ||||| || || ||| | || | ||| || || || || Sbjct 781934 AGTGTACGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 781875 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || ||||| ||| ||| | || |||||||| ||| || Sbjct 781874 ATACCTTCCTTATCTTGGATTTTAGCCTTCACATTCTCAATGGTATCTGATGGTTCCACT 781815 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || || || || | ||||| || |||||||||||| Sbjct 781814 TCTAAAGTAATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCATA 781767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || ||||| | || || ||||| || || || ||||| Sbjct 781538 CCACCTCTCAAACGCAGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCAGAA 781479 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||| || |||||| | || | | || ||||| || Sbjct 781478 AGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGGG 781419 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||| ||| ||| |||| ||||| || ||| || Sbjct 781418 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCCACT 781359 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| || |||| ||| || ||||| || |||||| Sbjct 781358 TCCAATGTGATGGTTTTGCCAGTCAAAGTCTTAACAAAGATCTGCATA 781311 >seq2618 Length=201275 Score = 120 bits (132), Expect = 2e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || || || |||||||| ||| ||| | | | || || |||||| Sbjct 161654 TGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCCTCCAATTGT 161713 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | |||||||| |||||||| ||||||||||| ||||| ||||| Sbjct 161714 TTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTA 161773 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| |||| || || ||| | || || || | ||| ||||| ||||| || Sbjct 161774 GCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTACCCGTT 161833 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || |||||||| || || ||||| || Sbjct 161834 AGGGTTTTTACGAAGATCTGCATTTT 161859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362163821418444