Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3433 185 7e-42 seq170 114 1e-20 seq2763 113 4e-20 seq286 91.5 1e-13 >seq3433 Length=253125 Score = 185 bits (204), Expect = 7e-42 Identities = 475/720 (66%), Gaps = 5/720 (1%) Strand=Plus/Minus Query 100571 TTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGA-GAAGCTTTTG 100629 || |||||||| || || || ||||| ||||| || ||||| | || | | || ||||| Sbjct 146468 TTGGACCAGGCACCCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCATGTAG-TTTTG 146410 Query 100630 CGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAA 100689 ||| | | ||| | | || ||| ||||| |||||| |||||| || ||| | Sbjct 146409 GGCAGCTTTGTAGTCGATTACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAG 146350 Query 100690 CTCGTACGTTTTGCCCGTTTGCAGTTGTAGCTGGTCCAGCATCGCGCGCAATTCCTTCAG 100749 ||||| | ||||||||||| || || | || | ||| |||||| || |||| Sbjct 146349 TTCGTATTTCTTGCCCGTTTGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCAT 146290 Query 100750 TAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCGCCTTT 100809 || ||| ||| || || |||| | | | |||| || || ||| || ||||| Sbjct 146289 CAATATGACGTAAGTTTCACCGTCT---TTCGGGCTGCCGAGTTTCTCGTTAGCTCCTTT 146233 Query 100810 GCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAA 100869 ||| || || ||||||||||| ||||| | |||||||| | ||||| | | || Sbjct 146232 GCCTCCGGGGAACTCCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAA 146173 Query 100870 TTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAACGG 100929 ||||| | || | || || | | | || | | || | | ||| |||| || Sbjct 146172 CTCCTTCGCTGAAGCGACGAAACGGTGTCTCTTAACTGGGTCATCGAAGAAGAAGAAAGG 146113 Query 100930 GTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTT 100989 || | | |||||||| || || || || ||||| || | | || |||| | || Sbjct 146112 ATCTGCGAGGGTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTT 146053 Query 100990 GGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTT 101049 |||||| | || ||||||||||| ||||| || || ||||| | || | || || Sbjct 146052 CAACGCCATCAATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTT 145993 Query 101050 TTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACC 101109 || || || || | |||||||||||||| ||||| | || | || ||| || || Sbjct 145992 CTGTGGCTTCTGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCC 145933 Query 101110 CTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAG 101169 ||| ||||| |||| ||||| ||||| || || || | ||| |||| Sbjct 145932 AGAGCATGAGCGTTGCAACGCTTGGAAACTACCTTCGATTTCCTTCAAACTGTCATTGAT 145873 Query 101170 GCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGG 101229 ||| || || || || || || ||||| || || | |||||| | | ||| || | || Sbjct 145872 GCCATCACCACCACAGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGG 145813 Query 101230 CACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGCAGCGAC 101289 || || || ||| | || || |||||||||||| || ||||| ||||| |||| Sbjct 145812 GACACGATCGACTGGATACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGCGCCGAC 145753 >seq170 Length=994537 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 || |||||| || ||||| ||||||| | | |||| ||| |||||||| | || | Sbjct 674155 GATGTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCCTGCTT 674214 Query 21198 CGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 ||| ||||| |||||| ||| ||||||||||||||||| || |||||||||||||||| Sbjct 674215 CGTGGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAACTCGTG 674274 Query 21258 AACGTGAAAGCCGTGC 21273 ||||| || || ||| Sbjct 674275 CACGTGGAAACCATGC 674290 >seq2763 Length=379199 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 ||||| || || || || || || || || || | || || ||||| ||| |||||| Sbjct 319655 ACCTTCTGAACGTATTCACGACCTTTCACTAGCTGAACATAAGCGCATCGCGAAAACCAA 319714 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 ||||||| |||| ||| || ||||||| | ||||||| | || ||||| |||||| Sbjct 319715 CGCGCGTGCTGTTCCCAAGGTACGTCATCATTTTCCCAGTCTTTTAAGCCGCCATCGCAG 319774 Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052 | |||||||| ||| |||| | || ||||||||||| || ||||| || |||| | Sbjct 319775 AAGAAACATTTAGTTTTATCGCCCTGTCCCGTGTAAAAGAAACCCGCTTCCGCCAGTTCT 319834 Query 25053 TCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGCTTCT 25112 || || ||| || || || ||||| || | ||| || || | || || || ||| Sbjct 319835 TCTGGTTTTTGACGCATACTTCGGGGCCAATCGGCAAAAGTCCGTAGGCGAGCCGCCTCT 319894 Score = 113 bits (124), Expect = 4e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 25232 CAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTC 25291 || ||| || |||||||| |||||| ||||||||| ||| ||||||||||| | || Sbjct 320029 CAGAAAAGGACATTGCGGTGCCCATCGTTGATGATCTTTAGCTGGGTCGTCGCCTTCGTC 320088 Query 25292 CCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTA 25351 ||| | ||| |||||||| || ||||| ||||| ||||||||||| || || || | || Sbjct 320089 CCATCTCATTATCTCCACCTTACAAAAGGCGCAACGCACTTCGTCCCCACGACCGAGATA 320148 Query 25352 GTAGAACCCATT 25363 ||| || ||||| Sbjct 320149 GTAAAATCCATT 320160 >seq286 Length=933739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||||||||| || ||||| | | || | | || |||| || || || Sbjct 377596 GTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATCTTCCAATTGCTTTCCG 377537 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| || ||||| || || | |||||||| || |||||| |||| Sbjct 377536 GCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATCTTGAATTTTAGCTTTT 377477 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| || || || || | |||||||||||||| || | |||| Sbjct 377476 ACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGTTTTACCCGTAAGAGTT 377417 Query 19025 TTGACAAAAATTTGCATTTTAA-ATCTCTTATAAA 19058 || |||||||| ||||| |||| |||| | | ||| Sbjct 377416 TTCACAAAAATCTGCATCTTAATATCTGTAACAAA 377382 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||| || ||||| | | || | || || ||||||||||| Sbjct 377824 GTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCA 377765 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| | ||| || || || | |||||||||||| |||||| ||| Sbjct 377764 GCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATTTTTGCTTTA 377705 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | || || |||||| ||| | || ||||||||||| || | || Sbjct 377704 ACGTTTTCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGTTTTACCAGTCAGGGTC 377645 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||||||||||||| Sbjct 377644 TTGACAAAAATTTGCATT 377627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| || || |||| || | |||||||| |||||||||||||| || | Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGAT 782163 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || |||||||| || ||| |||| | ||| ||||| || ||| Sbjct 782162 AATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGA 782103 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || || || |||||| || || | | | || || || ||| | Sbjct 782102 ATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACT 782043 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || ||||| |||||||| ||||||||||| Sbjct 782042 TCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414555196720696