Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq286 102 5e-17 >seq286 Length=933739 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| || ||||||||||| || || ||||| |||||||||||||| Sbjct 781083 ACCACCTCTCAAACGCAGTACTAAATGCAATGTAGATTCCTTTTGGATATTGTAATCAGA 781024 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || ||||||||||||||| ||| || | || || ||||| | || Sbjct 781023 GAGTGTACGCCCATCTTCCAATTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCAGGAGG 780964 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| ||| ||||| ||| ||| || || |||| Sbjct 780963 GATACCTTCCTTATCTTGAATCTTAGCC---TTTACATTTTCAATGGTATCCGATGGTTC 780907 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||| || || | ||||| || || || ||||| Sbjct 780906 TACTTCTAGCGTTATTGTTTTGCCAGTCAATGTTTTCACAAAGATCTGCAT 780856 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || || | ||| |||||||| | || ||||||||||| |||||||| ||||| Sbjct 782223 ACCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGA 782164 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | || || | || ||||| ||| || || | ||||||||| | ||| Sbjct 782163 TAATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGG 782104 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || || | ||| || || | | ||| ||||| |||| Sbjct 782103 AATGCCTTCCTTATCTTGAATTTTAGCC---TTCACATTCTCAATGGTGTCTGATGGTTC 782047 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || || || || || | ||||| |||||||||||||| Sbjct 782046 CACTTCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || |||| |||||||||||||| || ||||| || ||||| |||||||| Sbjct 781539 ACCACCTCTCAAACGCAGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCAGA 781480 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || || || | |||||| ||| || || | | |||||||| | || Sbjct 781479 AAGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGG 781420 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | ||| || || ||| ||| ||||| |||| Sbjct 781419 GATTCCTTCCTTATCTTGGATTTTAGCC---TTCACATTTTCAATGGTGTCAGATGGTTC 781363 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| || || ||||| || || | ||| || || || || ||||| Sbjct 781362 CACTTCCAATGTGATGGTTTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 781312 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || || || ||||||| |||||||||||| || ||||| ||||| || Sbjct 781767 ACCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGA 781708 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || || |||||||||||||| || || | ||| ||||| || | || Sbjct 781707 TAGAGTACGTCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 781648 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || | | | ||| || || | | ||| ||||| |||| Sbjct 781647 GATACCTTCCTTGTCTTGGATTTTAGCC---TTCACATTCTCAATGGTGTCTGATGGTTC 781591 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | ||| || || || || || | ||| || || ||||| ||||| Sbjct 781590 AACTTCTAAAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || || || | || || || ||||| || || ||||| || | | | Sbjct 377614 CGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCA 377555 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||||||||| ||| || | | ||||||||| | || || || ||||| Sbjct 377554 TCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTA 377495 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| || ||||| |||| ||| || | || || Sbjct 377494 TCTTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATG 377435 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||| |||||||||||||| || ||||| ||||| || || Sbjct 377434 GTTTTACCCGTAAGAGTTTTCACAAAAATCTGCATCTTAAT 377394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318764064304632