Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq286 129 4e-25 seq1176 104 2e-17 seq2763 98.7 7e-16 >seq286 Length=933739 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 ||||||| |||||||| || |||||||| || || ||||||||||||||| || || Sbjct 782224 AACCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAG 782165 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 |||| || |||| || | |||||||||||||| ||||| | ||||||||| | | Sbjct 782164 ATAATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGG 782105 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| |||||| || || | ||| || |||| || |||| Sbjct 782104 GAATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCA 782045 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || ||||| || || || || |||||||| Sbjct 782044 CTTCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| | ||| || ||||| || || |||||| || ||||||||||| Sbjct 781995 ACCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGA 781936 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | ||| |||| |||||||| ||||| || || || | || ||||| || |||| Sbjct 781935 TAGTGTACGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 781876 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||||| || || | ||| ||||||| || ||||| Sbjct 781875 GATACCTTCCTTATCTTGGATTTTAGCCTTCACATTCTCAATGGTATCTGATGGTTCCAC 781816 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || ||||| || || || || |||||||| Sbjct 781815 TTCTAAAGTAATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| | ||| || ||||| || || |||||| || ||||||||||| Sbjct 781767 ACCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGA 781708 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| |||||||| ||||| || || || | || ||||| || |||| Sbjct 781707 TAGAGTACGTCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 781648 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||||| || || | ||| || |||| || || || Sbjct 781647 GATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCAAC 781588 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||| || || || |||||||| ||||| || ||||| Sbjct 781587 TTCTAAAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | || ||||| || ||| || || || ||||| |||||| Sbjct 379679 ACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGA 379620 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||| |||||| || ||||| |||| || |||||||| ||| Sbjct 379619 GAGAGTG-CGACCATCTTCCAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAG 379561 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||| || |||||| ||||| | ||| || || | || || | Sbjct 379560 GGATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGA 379501 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || || |||||||||||||||||||| Sbjct 379500 CTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | || ||||| || ||| || || |||||||| || || Sbjct 378311 ACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGA 378252 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||| |||||| || || || |||| || ||||| || ||| Sbjct 378251 GAGAGTG-CGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAG 378193 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||| ||| ||| || ||||| | ||| || || | ||||||| Sbjct 378192 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCA 378133 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || || ||||||||||| |||||||| Sbjct 378132 CCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | || ||||| || ||| || || || ||||| || ||| Sbjct 379451 ACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGA 379392 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||| |||||| || || || |||| || |||||||| ||| Sbjct 379391 GAGAGTG-CGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAG 379333 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | || ||||| || |||||| ||||| | ||| || || | ||||||| Sbjct 379332 GGATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCA 379273 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || || |||||||||||||||||||| Sbjct 379272 CCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | | || ||||||| || || ||||| ||||||||||| Sbjct 781311 ACCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGA 781252 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| || | ||||| || ||||| || | | |||||||| ||| Sbjct 781251 AAGAGTG-CGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAG 781193 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| ||||| || || | ||| ||| |||| || || | Sbjct 781192 GGATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCAA 781133 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || ||||| || || ||||||||||| ||||| || ||||| Sbjct 781132 CTTCCAATGTGATTGTCTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | || ||||| || ||| || || || ||||| || || Sbjct 378767 ACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCCGA 378708 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| |||| |||||| || || || |||| || |||||||| ||| Sbjct 378707 GAGAGTG-CGACCATCTTCCAGTTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGAG 378649 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||||||| ||| ||| || ||||| | ||| || || | || || | Sbjct 378648 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCAA 378589 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || || ||||| |||||||||||||| Sbjct 378588 CTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTACAAATATTTGCAT 378540 >seq1176 Length=404280 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 ||||||| | |||||| || |||||||| || || ||||||||||||||| || || Sbjct 385203 AACCTCCCCACAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAG 385144 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 |||| || |||| || | |||||||||||||| ||||| | ||||||||| | | Sbjct 385143 ATAATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTAGGG 385084 Query 44013 GTACACCTTCTTTATCTGAAATTTT 44037 | | ||||| |||||| |||||| Sbjct 385083 GAATGCCTTCCTTATCTTGAATTTT 385059 >seq2763 Length=379199 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10910 GTGAAGTTGAGCGTTTAAAAACATTTGTAGATTGGCCTGTTGTGTTTTTGTCGCCGCAAC 10969 |||||| ||||| | |||||||| | | ||||| ||| ||| | ||||| ||| Sbjct 320231 GTGAAGAGGAGCGCCTGAAAACATTCGATAAATGGCCAGTTTCCTTTCTATCGCCTGAAC 320172 Query 10970 TGTTAGCCAAAAATGGATTTTACTATTTGGGAAGAAGTGATGAGGTGAGATGTGCTTTTT 11029 | | || | |||||||||||||||| | || | | || || ||| | || || |||| Sbjct 320171 TTCTCGCTAGAAATGGATTTTACTATCTCGGTCGTGGGGACGAAGTGCGTTGCGCCTTTT 320112 Query 11030 GTAAAGTAGAAATTATGCGTTGGAAAGAAGACGACGATCCAGAAACAGAACATAGAAAAT 11089 |||| || || || ||| | ||| | |||| |||||| |||| | ||| ||| | || Sbjct 320111 GTAAGGTGGAGATAATGAGATGGGACGAAGGCGACGACCCAGCTAAAGATCATCAACGAT 320052 Query 11090 GGTCTCCTCAATGTTCTTT 11108 || | || |||||| |||| Sbjct 320051 GGGCACCGCAATGTCCTTT 320033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354762535699632