Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3433 210 2e-49 seq2763 98.7 8e-16 seq286 91.5 1e-13 >seq3433 Length=253125 Score = 210 bits (232), Expect = 2e-49 Identities = 577/877 (66%), Gaps = 13/877 (1%) Strand=Plus/Minus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161 || || ||||| || ||||| ||||| || ||||| || | ||| || |||| || Sbjct 146627 ACTCCGGTCCACCCACGGCCATACATAGCGACGCCTACTACAATCTTCTTAGGGTTGACA 146568 Query 101162 CCCTG-GTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCA 101220 || || | | || | || || || | || || ||||| || || || ||||| Sbjct 146567 CCTTGAGCTAACAAGTACTGTA-CACCGAAGTCAGTTGTGTACGTTTCCTTCGGATTCCA 146509 Query 101221 ACTC-GGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGA 101279 ||| || || || | || ||| |||| || | | || ||||| || || |||| Sbjct 146508 -CTCAGGTGCATATAATGAAGTCTGATGTCCTAAAGTATCATTGGACCAGGCACCCTTGA 146450 Query 101280 AATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTA 101339 | ||||| |||||||| ||||| | || | | | ||||| ||| | ||| | | || Sbjct 146449 AGTCGTAACTCATGAGGAATATGTGGTCCATGTAGTTTTGGGCAGCTTTGTAGTCGATTA 146390 Query 101340 CAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTT 101399 | ||| ||||| || | ||| || || ||| | ||||||| | |||||||||| Sbjct 146389 CTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAGTTCGTATTTCTTGCCCGTTT 146330 Query 101400 GCAGTTGCAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAG 101459 | || || |||| | |||| |||||| ||||||| || ||| ||| || ||| Sbjct 146329 GAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCATCAATATGACGTAAGTTTCAC 146270 Query 101460 CGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCAAT 101519 |||| || | |||||||| | ||| || ||||| || || || |||||||| | Sbjct 146269 CGTC---TTTCGGGCTGCCGAGTTTCTCGTTAGCTCCTTTGCCTCCGGGGAACTCCCAGT 146213 Query 101520 CGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCACAA 101579 ||||||| | |||||||| | |||||| | | || || || | ||| | || | Sbjct 146212 CGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAACTCCTTCGCTGAAGCGACGA 146153 Query 101580 ACACACGCCGT---TTTATCGCGTCGTGCATATAATAGAACGGGTCGGACAATGTCCAGC 101636 | ||| || || | | ||| | | | |||| || || | | ||||||| Sbjct 146152 A---ACGGTGTCTCTTAACTGGGTCATCGAAGAAGAAGAAAGGATCTGCGAGGGTCCAGC 146096 Query 101637 CGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGAC 101696 | || || || || | ||| || | | || |||| ||| |||||| | || | Sbjct 146095 CACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTTCAACGCCATCAATTGGC 146036 Query 101697 CAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTG 101756 | || ||||||||||| || || ||||| | ||| | |||||||| || || || | | Sbjct 146035 CGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTTCTGTGGCTTCTGCAAAG 145976 Query 101757 CGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCA 101816 ||||||| ||||| || || | || |||| ||| || || ||| || ||||||| Sbjct 145975 CGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCCAGAGCATGAGCGTTGCA 145916 Query 101817 ACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAA 101876 |||||| |||||||| || || | ||| || | |||||| || ||||| | Sbjct 145915 ACGCTTGGAAACTACCTTCGATTTCCTTCAAACTGTCATTGATGCCATCACCACCACAGA 145856 Query 101877 TGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAA 101936 | || ||||| || || | || ||| | | || || | || || || || ||| Sbjct 145855 TCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGGGACACGATCGACTGGAT 145796 Query 101937 AGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 | || || |||||||||||||| ||||| ||||| Sbjct 145795 ACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGC 145759 >seq2763 Length=379199 Score = 98.7 bits (108), Expect = 8e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 23888 CACAAACGGGCACTGCGGTGCCCATCGTTTATGATCTACGGCCGGGTCATCGCCCTCCAA 23947 || ||| || || |||||||||||||||| ||||||| || ||||| ||||| || Sbjct 320029 CAGAAAAGGACATTGCGGTGCCCATCGTTGATGATCTTTAGCTGGGTCGTCGCCTTCGTC 320088 Query 23948 CCAGCGCATTATTTCCACTTTGCAAAACGCGCAGCGCACCTCGTCCGAGCGCCTCAAATA 24007 ||| | |||||| ||||| || ||||| ||||| ||||| |||||| || | | ||| Sbjct 320089 CCATCTCATTATCTCCACCTTACAAAAGGCGCAACGCACTTCGTCCCCACGACCGAGATA 320148 Query 24008 GTAAAACCCGTT 24019 |||||| || || Sbjct 320149 GTAAAATCCATT 320160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 23554 CCTTT-ACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCGTGTTCTTCCCACGGC 23612 ||||| || ||| | || || | ||| || ||||||||| ||||| | |||||| || Sbjct 319676 CCTTTCACTAGCTGAACATAAGCGCATCGCGAAAACCAACGCGCGTGCTGTTCCCAAGGT 319735 Query 23613 TCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAACATTTGACCCTGTCA 23672 |||| ||||||||||||| | |||||| ||||| |||||||| | || Sbjct 319736 ACGTCATCATTTTCCCAGTCTTTTAAGCCGCCATCGCAGAAGAAACATTTAGTTTTATCG 319795 Query 23673 CCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGCTTTTGTTTTAAACTA 23732 |||| || |||||| | ||||| ||||| || | || ||||| ||||| | ||| Sbjct 319796 CCCTGTCCCGTGTAAAAGAAACCCGCTTCCGCCAGTTCTTCTGGTTTTTGACGCATACTT 319855 Query 23733 ACCGGCCAATCCACAAAAGT 23752 |||||||| ||||||| Sbjct 319856 CGGGGCCAATCGGCAAAAGT 319875 >seq286 Length=933739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || |||||||| || || ||||| |||||| | || | |||||| | || Sbjct 377831 ATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTG 377772 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| | ||||| | |||||| || || | ||| |||||||| |||||| Sbjct 377771 TTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATTTT 377712 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 | ||| || | ||| | || ||| || ||||| || |||||||| || || Sbjct 377711 TGCTTTAACGTTTTCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGTTTTACCAGT 377652 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || |||||||||||||||||| Sbjct 377651 CAGGGTCTTGACAAAAATTTGCATT 377627 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| || || || || |||||||| ||||| ||||| |||||| Sbjct 377628 TTCCACCACGAAGACGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGG 377569 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | || | |||||||||||| || || ||| |||||||||| || || ||| | Sbjct 377568 AGAGGGTCCTTCCATCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAG 377509 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || ||||| || |||||| ||| || | | | || || ||||| Sbjct 377508 GAATACCCTCTTTATCTTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAA 377449 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | ||||||||||| || || | ||||| |||||||| ||||| || Sbjct 377448 CCTCTAATGTAATGGTTTTACCCGTAAGAGTTTTCACAAAAATCTGCATCTT 377397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | || ||||| |||||||| || ||||| |||||||| || ||||| || Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAG-- 782165 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 ||| | | || |||||| | ||||| || ||| |||| | || || || || || Sbjct 782164 ATAATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGG 782105 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| || || |||||| ||||| | ||| | || |||||| Sbjct 782104 GAATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCA 782045 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || || ||||| || || |||||||| ||||||||||| Sbjct 782044 CTTCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419569383803004