Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq286 192 1e-43 seq2618 141 2e-28 seq1698 104 5e-17 >seq286 Length=933739 Score = 192 bits (212), Expect = 1e-43 Identities = 183/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||||||| ||| ||||||||||| || || ||||| || ||| Sbjct 781085 ATACCACCTCTCAAACGCAGTACTAAATGCAATGTAGATTCCTTTTGGATATTGTAATCA 781026 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | ||| ||||||||||| || || | |||||| |||||| Sbjct 781025 GAGAGTGTACGCCCATCTTCCAATTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCAGGA 780966 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| |||||||| || ||||||||||| | |||||| |||||| Sbjct 780965 GGGATACCTTCCTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTATCCGATGGTTCT 780906 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || || || || ||||| | |||||| ||||| ||||||||| || Sbjct 780905 ACTTCTAGCGTTATTGTTTTGCCAGTCAATGTTTTCACAAAGATCTGCATTATG 780852 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| ||||| || || || || || || ||||| | ||| ||||| Sbjct 377596 GTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATCTTCCAATTGCTTTCCG 377537 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| ||||| || || || ||||| || || |||||||| ||||| || |||||| Sbjct 377536 GCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATCTTGAATTTTAGCTTTT 377477 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || ||||| ||||||| |||||| || ||||| ||||| ||| Sbjct 377476 ACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGTTTTACCCGTAAGAGTT 377417 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| |||||||| || Sbjct 377416 TTCACAAAAATCTGCATCTT 377397 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||||||| ||||||||||||||| || || |||||||| ||| Sbjct 781313 ATACCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCA 781254 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || ||||| ||||||||||| || ||||| || || ||| Sbjct 781253 GAAAGAGTGCGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGA 781194 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| || || || || || |||||||| | || || ||||| Sbjct 781193 GGGATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCA 781134 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || ||||| ||||| | || || ||||| |||||||| Sbjct 781133 ACTTCCAATGTGATTGTCTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 168 bits (186), Expect = 2e-36 Identities = 189/251 (75%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 104311 GTCTTTCCATACTTTATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT 104368 |||||| || | ||||| || || ||||| || | ||| |||||||| | |||||| Sbjct 379015 GTCTTTACAAA---TATTTGCATACCACCTCTCAGACGAAGGACTAGATGGAGGGTAGAT 378959 Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | ||| ||||| ||||| ||||| ||||| Sbjct 378958 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGTTGCTTTCCTGCAAAG 378899 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || |||||||| ||||| || || |||||||| ||||||||||| || || ||||| Sbjct 378898 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTC 378839 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| | || || ||||| || || | ||| || ||| Sbjct 378838 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 378779 Query 104549 AATATCTGCAT 104559 ||||||||||| Sbjct 378778 AATATCTGCAT 378768 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| |||| ||| | || ||||| ||||| ||||| ||||| Sbjct 378769 ATACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCC 378710 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| |||||||| ||||| ||||| || | ||| || || ||| Sbjct 378709 GAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGA 378650 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| || || ||||| || | || || |||||| Sbjct 378649 GGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCA 378590 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || || | ||| ||||||||||| ||||| Sbjct 378589 ACTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTACAAATATTTGCAT 378540 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || | ||| ||||||||||||||||| |||||||| ||| Sbjct 781541 ATACCACCTCTCAAACGCAGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCA 781482 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| ||||| || ||||| ||||| || ||||| || || ||| Sbjct 781481 GAAAGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGA 781422 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| || || || || || |||||||| | ||| || ||||| Sbjct 781421 GGGATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCC 781362 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || ||||| | || || ||||| |||||||| Sbjct 781361 ACTTCCAATGTGATGGTTTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 781312 Score = 159 bits (176), Expect = 8e-34 Identities = 187/251 (75%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 104311 GTCTTTCCATACTTTATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT 104368 |||||| || | ||||| || || ||||| || | ||| || ||||| | ||||||| Sbjct 378559 GTCTTTACAAA---TATTTGCATACCACCTCTCAGACGAAGGACAAGATGGAGTGTAGAT 378503 Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | ||| ||||| || || ||||| ||||| Sbjct 378502 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 378443 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || |||||||| ||||| || || || ||||| ||||||||||| ||||| ||||| Sbjct 378442 ATCAGTCTCTGTTGGTCAGGGGGGATACCCTCTTTGTCCTGAATCTTGGCTTTGACATTC 378383 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| | || || ||||| || || | ||| || ||| Sbjct 378382 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 378323 Query 104549 AATATCTGCAT 104559 ||||| ||||| Sbjct 378322 AATATTTGCAT 378312 Score = 159 bits (176), Expect = 8e-34 Identities = 178/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || ||||| || | ||| |||||||| | |||||||| |||||||| || Sbjct 379232 TATTTGCATACCACCTCTCAGACGAAGGACTAGATGGAGAGTAGATTCCTTCTGAATGTT 379173 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||| || || || || | ||| ||||| || ||||| |||||||| || || | |||||| Sbjct 379172 ATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTG 379113 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || ||||| || || ||||| ||||||||||| || || || || || | || || Sbjct 379112 GTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATTGTGTCCGA 379053 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| | || || ||||| || || | ||| ||||||||||| ||||| Sbjct 379052 GGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTTACAAATATTTGCAT 378996 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | ||||| ||| | ||| || |||||||| |||||||| || Sbjct 781997 ATACCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCT 781938 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| || | || || || | ||| ||||| || || || || | ||| ||||||||| Sbjct 781937 GATAGTGTACGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGA 781878 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || || || || || ||||| || | |||||| ||||| Sbjct 781877 GGGATACCTTCCTTATCTTGGATTTTAGCCTTCACATTCTCAATGGTATCTGATGGTTCC 781818 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||||||||| ||||| | |||||| || || || ||||| Sbjct 781817 ACTTCTAAAGTAATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | ||| | |||||| | ||||| ||||| || ||||| || || ||||| | Sbjct 380136 TTCCGCCGCGTAGACGAAGTACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTG 380077 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | ||||| | ||| |||||||||||||| |||||||| || || | ||| || || |||| Sbjct 380076 AAAGAGTGCGACCATCTTCTAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAG 380017 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | || |||||||| |||||||| || || || || || || | || || |||||| | Sbjct 380016 GGATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGA 379957 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || | || || ||||| || || | ||| || ||||| || ||||| Sbjct 379956 CTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAAGATTTGCAT 379908 Score = 150 bits (166), Expect = 4e-31 Identities = 176/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || ||||| || | ||| |||| ||| | || ||||| ||||||||||| Sbjct 378320 TATTTGCATACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATT 378261 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||||| || ||||| | ||| ||||| |||||||| ||||| || || || | ||| || Sbjct 378260 GTAGTCTGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTG 378201 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| || |||||||| || |||||||| || || || || || | || || Sbjct 378200 ATCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGA 378141 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| | || || ||||| || || | ||| || ||||| || ||||| Sbjct 378140 GGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | ||||| ||| | ||| || |||||||| |||||||| || Sbjct 781769 ATACCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCT 781710 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||| | || || || | ||| ||||| || || || || | ||| ||||||||| Sbjct 781709 GATAGAGTACGTCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGA 781650 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || || || || || ||||| || | ||| || ||||| Sbjct 781649 GGGATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCA 781590 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || ||||| ||||| | || || ||||| |||||||| Sbjct 781589 ACTTCTAAAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 781540 >seq2618 Length=201275 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || ||||| ||||| || || ||||| || ||||| | Sbjct 161639 AGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGG 161698 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || | |||||| ||||| || || | | |||||| || ||||| |||||||| Sbjct 161699 CCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCC 161758 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || || || || || |||||||| | || ||| || || ||||| || || Sbjct 161759 TTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTG 161818 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||||||| || || |||||||| || ||||||||||| Sbjct 161819 ATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCATTTT 161859 >seq1698 Length=195807 Score = 104 bits (114), Expect = 5e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 |||||||||||| ||||| ||||| ||||| || || || || ||||| |||||||| | Sbjct 124572 CCTCTGTTGATCCGGAGGGATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGAT 124631 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 || || ||||| ||||| || || || || || || ||||| |||||||| || || Sbjct 124632 AGTGTCCGAGGGTTCCACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAAGAT 124691 Query 104554 CTGCATTTTG 104563 |||||| ||| Sbjct 124692 CTGCATCTTG 124701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151347003014672