Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq980 122 5e-23 seq241 122 5e-23 seq3450 120 2e-22 seq3424 120 2e-22 seq777 120 2e-22 seq2684 118 6e-22 seq3137 116 2e-21 seq1630 116 2e-21 >seq980 Length=43115 Score = 122 bits (134), Expect = 5e-23 Identities = 85/97 (88%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4960 AATAAAAAAG---ACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4904 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||||||| ||||||||||||||||||||| ||||| Sbjct 4903 GACGCTCTAACCAACTGAGCTAATGGGCCGATGACGA 4867 >seq241 Length=380582 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11441 AATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| |||||| |||||||||||| |||||||||| |||||||||||||||||||| Sbjct 148056 AATATAAAAATGTCATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 148115 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||||||||| Sbjct 148116 CGACGCTCTAACCAACTGAGCTAATGGGCCG 148146 >seq3450 Length=203793 Score = 120 bits (132), Expect = 2e-22 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 885 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 944 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 |||||||||||||||| ||||| Sbjct 945 CTGAGCTAATGGGCCGATGACGA 967 Score = 118 bits (130), Expect = 6e-22 Identities = 77/84 (92%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 6511 AAAAT-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 6453 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 6452 TCTAACCAACTGAGCTAATGGGCC 6429 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| | |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 9186 ATAAAAAAT-ATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 9128 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 9127 ACGCTCTAACCAACTGAGCTAATGGGCCG 9099 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 7211 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 7152 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 7151 CTGAGCTAATGGGCCG 7136 Score = 116 bits (128), Expect = 2e-21 Identities = 89/104 (86%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| || |||| |||| || | |||||||||| |||||||||| ||||||| Sbjct 11378 AAAAATAAAAAAAATACAAAAG-AATTGATGGCCCATGAGGGGATCGAACCCGCGACCTT 11436 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 11437 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 11480 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8401 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8342 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 8341 TGAGCTAATGGGCCG 8327 >seq3424 Length=1097208 Score = 120 bits (132), Expect = 2e-22 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 977709 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 977768 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 ||||||||||||||||| || || Sbjct 977769 CTGAGCTAATGGGCCGTTGAAGA 977791 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 960601 AATTAAAAAGATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 960660 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 960661 GACGCTCTAACCAACTGAGCTAATGGGCC 960689 >seq777 Length=284029 Score = 120 bits (132), Expect = 2e-22 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 192153 ATAAAAAAGAATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 192094 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| |||||||||||||||||||||| Sbjct 192093 ACGCTCTAACCAACTGAGCTAATGGGCCGT 192064 >seq2684 Length=525127 Score = 118 bits (130), Expect = 6e-22 Identities = 84/95 (88%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| | ||||| ||| | ||||||||||| |||||||||| |||||||||||||||| Sbjct 267579 AATCAGTAAAACAAT--ACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 267522 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||||||||||||||||||| Sbjct 267521 AGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 267487 >seq3137 Length=60744 Score = 116 bits (128), Expect = 2e-21 Identities = 89/107 (83%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAAT-------TGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||| | ||| || |||||| |||| |||||||||| |||||||||| |||| Sbjct 22870 ATAAATAATAAAAAAAAAAACAAAAGATTTGATGGCCCATGAGGGGATCGAACCCGCGAC 22811 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 22810 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 22764 >seq1630 Length=870754 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 826656 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 826597 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 826596 TGAGCTAATGGGCCGT 826581 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261480096756784