Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq209 430 2e-115 seq995 127 3e-24 >seq209 Length=133430 Score = 430 bits (476), Expect = 2e-115 Identities = 1182/1793 (66%), Gaps = 26/1793 (1%) Strand=Plus/Minus Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032 ||| | |||| ||| || | |||||||||||| | | | || ||||| || |||| Sbjct 15051 TTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAA 14992 Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 |||||||||||| ||||| || || | |||| | ||||| || || |||| || Sbjct 14991 ATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTT 14932 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 |||| | || || || | ||| || || | |||||| ||||| || ||||| || || Sbjct 14931 TCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACC 14872 Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62211 ||| || |||||||||| || | ||||| || |||||||||| || ||||| || Sbjct 14871 CCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAA 14812 Query 62212 CTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTGCCATAA 62268 || | | || |||| || | | || | |||| ||||| || ||| | || | Sbjct 14811 ATCTC-TGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTA 14753 Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 | ||| || || || |||| |||||| | | | || ||| | ||||| | || Sbjct 14752 TAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGT 14693 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTAT 62385 |||| || ||||||||||||||||| ||||| ||| || ||||| || ||| Sbjct 14692 GATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAA 14636 Query 62386 ACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTG 62445 | ||||| | || |||||||| || | |||||| ||||| ||||| || ||||| |||| Sbjct 14635 ATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTG 14576 Query 62446 CCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAAT 62505 | | | ||| || | |||||| | || ||||| || || ||| ||| | Sbjct 14575 CTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGT 14516 Query 62506 TCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-G 62564 ||| | ||| || ||| ||||| ||| || | |||||| | Sbjct 14515 CCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTG 14456 Query 62565 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 62624 || |||| |||| || ||| ||| || ||||| || ||||||| || || || Sbjct 14455 GAC-TTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 62625 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG--TGCTTCCAGGC 62682 || || || || || || ||||| || || || || || | |||| |||| | | Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGTT-CAACTTGATAGCTTTCTCAC 14339 Query 62683 TATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62742 | ||| ||||| | | | || ||| | ||| |||| |||||||| ||||| || | Sbjct 14338 TTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTA 14279 Query 62743 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62802 | || ||||| || ||| ||| ||| ||||||||||| || ||| | || | ||| | Sbjct 14278 TGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAA 14219 Query 62803 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62862 | ||||| || |||||| |||| |||| ||| || || | || ||||| | Sbjct 14218 TTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGA 14159 Query 62863 ATCGCCCATCT--ATT-ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 62919 | |||| ||| ||||||||||| | || | || |||| |||||| || || | Sbjct 14158 AAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAA 14099 Query 62920 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 62979 | |||| | | || | || || ||||| || ||||| || || || || || | Sbjct 14098 CTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGC 14039 Query 62980 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63039 | | ||||| |||||| || ||| | || || | |||||||| | ||| | || || | Sbjct 14038 CAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTC 13979 Query 63040 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63099 |||| || | |||| ||||| ||| |||||||| | | | || |||| | | | Sbjct 13978 CAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACT-TGCTTA 13920 Query 63100 TGTATC-TCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63158 | | | ||||| ||| ||| | ||| | ||| ||||| ||||||| |||| Sbjct 13919 ACAAACTTTTTTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCC-AACA 13861 Query 63159 TTGTCCAA-TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63217 | | || ||||| || |||| |||||||| | ||| | | ||| | | || Sbjct 13860 ATCTGAAAGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAAC 13801 Query 63218 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63277 | ||||||||| | ||| || ||||||||||| ||| | ||||| | | ||| Sbjct 13800 CCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTC 13741 Query 63278 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63337 || || |||||||| ||||| ||||| | ||| | | |||||| | |||||| ||||| Sbjct 13740 TTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTC 13681 Query 63338 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63397 |||||| || || | | ||||| | || || || || ||||||| |||||||| || Sbjct 13680 CAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGT 13621 Query 63398 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63457 ||| ||||| ||||| |||||||| | | || || || | ||||| || || | || Sbjct 13620 GTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTAT 13561 Query 63458 ATAGCTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516 ||| || | || | ||| | || || ||||||||| || || || ||| | Sbjct 13560 GTAGGACCCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGCTGATTTTG 13502 Query 63517 AGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 | || | ||| ||| |||| | || ||||| || || || || || || || |||| Sbjct 13501 AAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCATAG 13442 Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636 | || ||||| ||| | || | | ||| | ||| || | || ||| Sbjct 13441 CTATTAAGAAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGAC 13382 Query 63637 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63696 || || ||||| |||||||||| | | ||||| || | || || | || | || Sbjct 13381 TTGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAACAT 13322 Query 63697 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 | ||| ||||| | ||| || | ||| | ||| ||||| ||||| ||| Sbjct 13321 CTTCACCATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTCA 13269 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||| || |||||||||| ||| || ||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||| |||| || || | || |||| | ||| | ||||| Sbjct 13029 CTTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTT 12985 >seq995 Length=359585 Score = 127 bits (140), Expect = 3e-24 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || ||| ||| || ||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || ||||| || || |||||| ||||| ||||| || || ||||| |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33500 |||||| ||| || || || | || ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 |||||||| |||||||| || | ||||| || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622920070649440