Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq3433 259 4e-64 seq2763 136 3e-27 seq286 120 3e-22 seq170 114 1e-20 seq1176 100 2e-16 >seq3433 Length=253125 Score = 259 bits (286), Expect = 4e-64 Identities = 645/971 (66%), Gaps = 19/971 (2%) Strand=Plus/Plus Query 32171 GTCGCTGCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTG 32230 |||| ||||| ||||| ||||||||||||||| ||| || | ||| | || || Sbjct 145753 GTCGGCGCGTACTTTGTCGAATGGGGCGTGTACCCGCGAAAGTATCCAGTCGATCGTGTC 145812 Query 32231 CCGTTGCCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGA 32290 || | || ||||| | |||||| | || || || || || || || || || || || Sbjct 145813 CCCATTCCTAATTTAACTCATCTGCTATATGGCTTCATCCCGATCTGTGGTGGTGATGGC 145872 Query 32291 CTAAACGATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCA 32348 | || || | | || || | || || ||||| | ||| ||||||| || ||| Sbjct 145873 ATCAATGA--CAGTTTGAAGGAAATCGAAGGTAGTTTCCAAGCGTTGCAACGCTCATGCT 145930 Query 32349 AAGGCCGCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGC 32408 || |||| |||||||| ||| | ||||| || || |||||||| | || || || | Sbjct 145931 CTGGGCGCGAAGACTTTACGGTGTCGATTCATGATCCCTGGGCCGCTTTGCAGAAGCCAC 145990 Query 32409 AGAAGGGCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGG 32468 |||| || | ||| | ||||| ||||| ||||||||||| || ||||||||||||||| Sbjct 145991 AGAAAGGACTCTCTTCCTGGAATGAACCTTACAAAGGCAATTTCGGCCAATTGATGGCGT 146050 Query 32469 CCAAGTTGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGG 32528 || || | ||| | | || ||| | ||||||||||| || ||||| | | | Sbjct 146051 TGAAACAAGCCAGGCCTGATTTGAAGATTCTCCCATCTATTGGTGGCTGGACCCTCGCAG 146110 Query 32529 ATCCCTTTTATTTTATGCACGACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAG 32588 |||| || | || | | ||| | | || | ||| || |||| ||| | || | Sbjct 146111 ATCCTTTCTTCTTCTTCGATGACCCAGTTAAGAGACACCGTTTCGTCGCTTCAGCGAAGG 146170 Query 32589 AGTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCG 32648 |||| | | |||||| | |||||||| | ||||| || ||||||||||| || | Sbjct 146171 AGTTCCTTCTAACCTGGAAAATGTTTGACGGTCTCGACATCGACTGGGAGTTCCCCGGAG 146230 Query 32649 GCAAAGGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTT 32708 ||||||| || ||| | ||||| | | | | |||| | || ||| | || | Sbjct 146231 GCAAAGGAGCTAACGAGAAACTCGGCAGCCCGAA---AGACGGTGAAACTTACGTCATAT 146287 Query 32709 TGTTACAAGAATTGCGTTCTATGCTGGACGACCT-TCAATTGCAAACGGGCAAAACGTAC 32767 || | |||| |||| ||| | |||| | || || ||||||||||| | ||| Sbjct 146288 TGATGAAAGAGCTGCGCGAAATGTTAAACGAATTATCTCTT-CAAACGGGCAAGAAATAC 146346 Query 32768 GAGTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGCC 32827 || | || || || ||||||||| ||||| ||| || | | || |||| Sbjct 146347 GAACTCACATCAGCTATCAGTGCCGGCTGGGACAAGATTCAAGTAATCGACTACAAAGCT 146406 Query 32828 GCGCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGGTCT 32887 || ||||| ||| | || | ||||| ||||||||||||||||| || || || ||||| Sbjct 146407 GCCCAAAACTACATGGACCACATATTCCTCATGAGTTACGACTTCAAGGGTGCCTGGTCC 146466 Query 32888 AACACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAATTG 32947 || ||| || ||||||| | || || || || |||||||| | ||| | Sbjct 146467 AATGATACTTTAGGACATCAGACTTCATTATATGCACCTGAGTGGAATCCGAAGGAAACG 146526 Query 32948 TACACCACAGATCACGCTGT---TAAATTGTTAACAAGTCAAGGTGTAGCTTCTTACAAA 33004 ||||| || || || ||| | |||||| | ||||||||| || | || Sbjct 146527 TACACAACTGACTTCGGTGTACAGTACTTGTTAGC---TCAAGGTGTCAACCCTAAGAAG 146583 Query 33005 ATCATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGTGGCTGGTTATGACGGC 33064 || | || ||| |||| ||||| || || |||||||| || || | |||| | | Sbjct 146584 ATTGTAGTAGGCGTCGCTATGTATGGCCGTGGGTGGACCGGAGTACACGATTATAAAGAG 146643 Query 33065 GATAAttttttttCGGGTACTGCGAAAGGCCCCATTTC--GGGCACGTGGGAAAACGGAG 33122 | |||| || || || ||||| ||| || || | ||| || ||| | |||| | Sbjct 146644 GGTAATCCCTTCTCTGGAGTTGCGACAGGACC--TTGCAAGGGAACATGGCAGGACGGCG 146701 Query 33123 TTGTTGACTAT 33133 |||| |||||| Sbjct 146702 TTGTGGACTAT 146712 >seq2763 Length=379199 Score = 136 bits (150), Expect = 3e-27 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 109222 CCCGTGCATCCCAAATACGCAACGGAAGTTGCACGTTTGCGCACTTTTGCAGAATGGCCT 109281 ||||| ||| | |||||| | || | || || | || |||||||| || ||||| Sbjct 319917 CCCGTACATTCGCGATACGCCTCAGAGGCGGCTCGCCTACGGACTTTTGCCGATTGGCCC 319858 Query 109282 CGTGGTTTGAAACAGCAACCCGATAAACTAGCCGAGGCCGGGTTTTATTACACGGGCCAG 109341 || || || || |||| || |||| || || || || || | ||||||||| ||| Sbjct 319857 CGAAGTATGCGTCAAAAACCAGAAGAACTGGCGGAAGCGGGTTTCTTTTACACGGGACAG 319798 Query 109342 GGCGATAAAACCAAATGTTTTTATTGTGACGGCGGTTTGAAAGACTGGGAGGCGGACGAT 109401 ||||||||||| |||||||| | || || ||||| || ||||||||||| || || Sbjct 319797 GGCGATAAAACTAAATGTTTCTTCTGCGATGGCGGCTTAAAAGACTGGGAAAATGATGAC 319738 Query 109402 GAGCCGTGGAAACTGCACGCGCGTTGGTTTGACCGTTGCCCTTACGTGTTGCTTGTTAAG 109461 | || ||| ||| |||||||||||||||| || ||| |||| || ||| || || Sbjct 319737 GTACCTTGGGAACAGCACGCGCGTTGGTTTTCGCGATGCGCTTATGTTCAGCTAGTGAAA 319678 Query 109462 GGTCGAGATTATGTGCAAAA 109481 ||||| || || || || || Sbjct 319677 GGTCGTGAATACGTTCAGAA 319658 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 109048 GGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAAATA 109107 |||||||| ||| | ||||| || ||||||||||| ||||| ||||| || ||||| ||| Sbjct 320157 GGATTTTACTATCTCGGTCGTGGGGACGAAGTGCGTTGCGCCTTTTGTAAGGTGGAGATA 320098 Query 109108 ATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACAGTGT 109167 ||| | ||| || || ||||||||||| || ||| || ||| || || || ||| Sbjct 320097 ATGAGATGGGACGAAGGCGACGACCCAGCTAAAGATCATCAACGATGGGCACCGCAATGT 320038 Query 109168 CCGTT 109172 || || Sbjct 320037 CCTTT 320033 >seq286 Length=933739 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 115275 AGAGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA 115334 ||| ||||| | |||| |||||||| ||||| || ||||| ||||||||||| | || Sbjct 377390 AGATATTAAGA-TGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGG 377448 Query 115335 CGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCC 115394 || | |||||| | | | | |||||| |||||| |||||||| || | | Sbjct 377449 TTGAACCGTCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTC 377508 Query 115395 CCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGG 115454 | || |||||||| ||||||| ||| || || ||||| ||||||| | ||| | Sbjct 377509 CTCCCGACCAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCT 377568 Query 115455 CCGATTATAACATTCAAAAAGAGTCTAC 115482 ||||||||||||||||||| || ||||| Sbjct 377569 CCGATTATAACATTCAAAAGGAATCTAC 377596 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | || || || || || || | ||| ||| ||| | Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAA-CCATC 782054 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || |||||| ||||| |||||| | ||| || || Sbjct 782055 AGACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCA 782114 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | |||| ||| || ||||| ||||||||| || | | || || || Sbjct 782115 GCAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTATCTGACTACAA 782174 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||||||| | ||| |||| ||||||||| | ||||| Sbjct 782175 TATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATTGAGGGGAGG 782222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||||||||| || || || || |||||||| || | ||| ||| | Sbjct 377627 AATGCAAATTTTTGTCAAGACCCTGACTGGTAAAACCATCACATTGGAAGTAGAGCCTTC 377686 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || ||| ||||||| || ||||| ||| | || || || Sbjct 377687 TGACACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAAGAGGGCATTCCTCCAGACCA 377746 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || | ||||| | ||| || ||||| | ||||||| ||| | |||||||||| Sbjct 377747 ACAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAA 377806 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || || ||||| Sbjct 377807 CATTCAGAAGGAATCTAC 377824 >seq170 Length=994537 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462 |||||| ||||| || ||||| | | || |||| ||| ||||| || || || ||||| Sbjct 674158 GTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCCTGCTTCGT 674217 Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522 |||||| || ||| |||||| |||||||| ||||| | ||||||| ||||||||||| Sbjct 674218 GGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAACTCGTGCAC 674277 Query 112523 GTGAAAACCGTGC 112535 ||| ||||| ||| Sbjct 674278 GTGGAAACCATGC 674290 >seq1176 Length=404280 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115370 AAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAA 115429 |||||| ||||| |||||| | ||| | || ||||||||| | |||| ||| || ||| Sbjct 385059 AAAATTCAAGATAAGGAAGGCATTCCCCTAGACCAGCAAAGATTGATTTTTGCAGGAAAA 385118 Query 115430 CAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACAT 115489 || ||||||||| || | | || || || |||||||||||||||||| | ||| Sbjct 385119 CAGCTAGAAGATGGTCGCACATTATCTGACTACAATATTCAAAAAGAGTCTACTCTTCAT 385178 Query 115490 ATGGTGTTGAGATTGCGAGGAGG 115512 |||| ||||||||| | ||||| Sbjct 385179 TTGGTCTTGAGATTGTGGGGAGG 385201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425325939362080