Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3433 185 8e-42 seq170 114 1e-20 seq209 111 1e-19 seq2618 107 2e-18 seq286 89.7 5e-13 seq995 84.2 2e-11 >seq3433 Length=253125 Score = 185 bits (204), Expect = 8e-42 Identities = 344/499 (69%), Gaps = 16/499 (3%) Strand=Plus/Plus Query 23637 GTCGCCGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTG 23696 |||| ||| ||||||||||| |||||||| || || || | | ||| || || || Sbjct 145753 GTCGGCGCGTACTTTGTCGAATGGGGCGTGTACCCGCGAAAGTATCCAGTCGATCGTGTC 145812 Query 23697 CCCGTGCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGA 23756 ||| | |||||||| | ||| |||| || |||||| | || || || || || || || Sbjct 145813 CCCATTCCTAATTTAACTCATCTGCTATATGGCTTCATCCCGATCTGTGGTGGTGATGGC 145872 Query 23757 ATTAACGACGCTCTCAA---AACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGC 23813 || || ||| | | || || || || |||||| | ||| |||| || || ||| Sbjct 145873 ATCAATGACAGTTTGAAGGAAATCGAA---GGTAGTTTCCAAGCGTTGCAACGCTCATGC 145929 Query 23814 GCGGGCCGCGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCG 23873 | || |||| ||||| | ||| || || || ||||| ||||| ||| | |||||||| Sbjct 145930 TCTGGGCGCGAAGACTTTACGGTGTCGATTCATGATCCCTGGGCCGCTTTGCAGAAGCCA 145989 Query 23874 CAGAAGGGAGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCA 23933 ||||| ||| | || | ||||| || || || || || || || || |||||||| Sbjct 145990 CAGAAAGGACTCTCTTCCTGGAATGAACCTTACAAAGGCAATTTCGGCCAATTGATGGCG 146049 Query 23934 ACGAAACTGGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCT 23993 ||||| || || | ||||| | || || || || ||||||||||| || | Sbjct 146050 TTGAAACAAGCCAGGCCTGATTTGAAGATTCTCCCATCTATTGGTGGCTGGACCCTCGCA 146109 Query 23994 GATCCGTT----TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGT 24049 ||||| || || | ||| | || || | || |||| || ||| || | Sbjct 146110 GATCCTTTCTTCTTCTTCGATGACCCAGTTAAGAG-ACACCGT---TTCGTCGCTTCAG- 146164 Query 24050 CGAA-GAGTTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCC 24108 |||| ||||| | |||| |||||| | |||||||| ||||||| || |||||||||| Sbjct 146165 CGAAGGAGTTCCTTCTAACCTGGAAAATGTTTGACGGTCTCGACATCGACTGGGAGTTCC 146224 Query 24109 CCGGCGGCAAAGGGGCAAA 24127 |||| |||||||| || || Sbjct 146225 CCGGAGGCAAAGGAGCTAA 146243 >seq170 Length=994537 Score = 114 bits (126), Expect = 1e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 51802 GCCTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGT 51861 ||||| ||||||||||| ||||||||||| | | || || | |||| |||||||| | Sbjct 674150 GCCTCGATGTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCC 674209 Query 51862 TTGCCAAG-GGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAA 51920 | || | ||| || |||||| ||| ||||||||||| ||||| || |||||||||| Sbjct 674210 T-GCTTCGTGGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAA 674268 Query 51921 CTCGTGCACGTGAAAGCCGTGC 51942 |||||||||||| || || ||| Sbjct 674269 CTCGTGCACGTGGAAACCATGC 674290 >seq209 Length=133430 Score = 111 bits (122), Expect = 1e-19 Identities = 474/741 (64%), Gaps = 11/741 (1%) Strand=Plus/Minus Query 145049 AAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGAC 145108 |||| |||||||| || ||||| || || | || ||||| | ||| | ||| || Sbjct 14699 AAGTGGTGATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGATAAATGTTTGAA 14640 Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 || || |||||||| || || ||||| || || ||||| || || | ||| ||||||||| Sbjct 14639 GTAAATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATG 14580 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 || | | |||||| || || || || | ||| || | |||||| || | | Sbjct 14579 GGTGCTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGAC 14520 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 || ||||| | | || | |||||||| || || || ||||| || | ||| Sbjct 14519 CAGTCCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTG 14460 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCG 145346 || || || |||| | | | || || | | ||| ||| || || || | || | Sbjct 14459 GCTGGACTTCCTTCATAAGTGCTATA--TACTCCATCTTTCTCTGCAAGTTCACTGCTTG 14402 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCAT 145406 | |||| ||||| | || ||||| || ||||| ||| | | || |||| | Sbjct 14401 CTTCCAAGGCGCCATAGTATATTGTTTCAAATATTTGTTGGTTCAACTTGATAGCTTTCT 14342 Query 145407 CGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGC 145466 | || || || || || |||| | ||||| | ||||| || || || | ||| | | Sbjct 14341 CACTTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTC 14282 Query 145467 CGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGA--TAGGATATCGATTACG 145524 | ||||||| ||| | | || | | || || || | || | | | || Sbjct 14281 CTATGGGCCTATGCCTAAGATTTGAGTTTTTAGCTT-CTGGAACTGGGTAAAAGTTGACA 14223 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 || || ||||| || | ||| | || || || || | | ||||||||||| Sbjct 14222 -TCAATTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAA 14164 Query 145585 GTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACA 145644 | || || ||| || | ||| | || | || || || ||||||||||| Sbjct 14163 ATTGAAAGTTTTATCTTCATTAACAA-ACA--TGTTTAGTGCTATTGAAGCCAAATTACA 14107 Query 145645 AACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTT 145704 ||||| || || | |||| | ||| || || | || | |||||| ||||| Sbjct 14106 GACTGCAACTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTT 14047 Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTA 145764 || || || ||||||| ||||| ||||| || ||||| | |||||| || | |||||| Sbjct 14046 TATTGTGCCAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTA 13987 Query 145765 CGGTCCGCCAGTCTCCACCTG 145785 |||| ||||||||||| || Sbjct 13986 CGGTGTTCCAGTCTCCACTTG 13966 >seq2618 Length=201275 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || |||||||| ||| | || || ||||| | || || || Sbjct 161660 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCCTCCAATTGTTTACCA 161719 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| |||||||| ||||| ||||| |||||||| ||||| |||||| ||| Sbjct 161720 GCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTC 161779 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| |||| | ||| | || | ||| | ||| ||||| ||||| ||| Sbjct 161780 ACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTACCCGTTAGGGTT 161839 Query 131218 TTTACGAAAATCTGCAT 131234 |||||||| |||||||| Sbjct 161840 TTTACGAAGATCTGCAT 161856 >seq286 Length=933739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||||| || | ||| || |||||||||||||| |||||| Sbjct 377626 CCACCACGAAGACGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAG 377567 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || | ||||| || || | || | | |||||||| ||||| Sbjct 377566 AGGGTCCTTCCATCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGA 377507 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || ||||| || ||| ||| || || | | || | ||| || | | || | Sbjct 377506 ATACCCTCTTTATC-TTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAAC 377448 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||| || |||||||| || ||||||||||| Sbjct 377447 CTCTAATGTAATGGTTTTACCCGTAAGAGTTTTCACAAAAATCTGCAT 377400 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || |||||||| | || || ||||| || || ||||||||| Sbjct 379678 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAG 379619 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || || || || |||| | |||||||||||| |||||| Sbjct 379618 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 379559 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| ||||| | ||| | || || | | |||| Sbjct 379558 ATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACT 379499 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || || || || ||||| Sbjct 379498 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379452 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || || |||| || |||||||| || |||||||| || Sbjct 380134 CCGCCGCGTAGACGAAGTACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAA 380075 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || ||||| || || || || |||| | |||||||||||| |||||| Sbjct 380074 AGAGTGCGACCATCTTCTAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 380015 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| ||||| | ||| | || || | | |||| Sbjct 380014 ATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACT 379955 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || || || || ||||| Sbjct 379954 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAAGATTTGCAT 379908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||||||| |||||||||| || || |||||||| || || ||||| Sbjct 781310 CCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGAA 781251 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || || | || | | ||||||||| |||||| Sbjct 781250 AGAGTGCGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGG 781191 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || |||||| ||| | | || | ||| || | | || | Sbjct 781190 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCAACT 781131 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || |||| ||| || || || |||||||| Sbjct 781130 TCCAATGTGATTGTCTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || |||| ||| | ||| || ||||| || |||||||| || Sbjct 378994 CCACCTCTCAGACGAAGGACTAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAG 378935 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || ||||| ||||| |||| | | ||| ||||| || ||| Sbjct 378934 AGGGTGCGACCATCTTCAAGTTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGG 378875 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || || ||||| | ||| | || || | || ||| | Sbjct 378874 ATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAGGGCTCCACC 378815 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || || || |||||||| Sbjct 378814 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATCTGCAT 378768 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || |||||||| | || || ||||| || || ||||| ||| Sbjct 379450 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 379391 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || || || || ||| |||| | |||||||||||| |||||| Sbjct 379390 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 379331 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||||| ||||| | ||| | || || | | ||| | Sbjct 379330 ATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACC 379271 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || || || || ||||| Sbjct 379270 TCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 >seq995 Length=359585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 46353 CGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACT 46412 ||||||| |||| || ||||| ||| ||| ||| ||||||| | |||| ||| || Sbjct 121834 CGTGCTGGGCATCATCCGCGAGGCCGTGCTCATCGAGCAGGAGTTCCTGACGGACGCGCT 121775 Query 46413 GCCCGCTGC-CCTGCTGGGCATGAAC-GCACAGTCAATGTGCGACTACATCGAGTTTGTA 46470 ||||| ||| |||||| ||||||||| || ||| ||| ||| ||||||||||| || Sbjct 121774 GCCCG-TGCGCCTGCTCGGCATGAACTGCGACCTCA-TGTCCGAGTACATCGAGTTCGTG 121717 Query 46471 GCGGACCGACTGCTCGT 46487 || || || ||||| || Sbjct 121716 GCCGATCGCCTGCTAGT 121700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471992243842560