Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3433 224 8e-54 seq2618 114 1e-20 seq2177 100 2e-16 seq286 100 2e-16 seq170 96.9 3e-15 >seq3433 Length=253125 Score = 224 bits (248), Expect = 8e-54 Identities = 583/880 (66%), Gaps = 19/880 (2%) Strand=Plus/Minus Query 96132 ACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCACG 96191 ||||| ||||| || || || ||||| || ||||| || | ||| || |||| || Sbjct 146627 ACTCCGGTCCACCCACGGCCATACATAGCGACGCCTACTACAATCTTCTTAGGGTTGACA 146568 Query 96192 CCTTGATTTGTGA-GCAATTTA-ACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCC 96249 |||||| | | | | | || || | | ||| || ||||| || || || |||| Sbjct 146567 CCTTGAGCTAACAAGTACTGTACACCGAA--GTCAGTTGTGTACGTTTCCTTCGGATTCC 146510 Query 96250 AACTC-GGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACCACGCGCCTTTA 96308 | ||| || || || | || ||| || | ||| ||| | || ||||| || || || Sbjct 146509 A-CTCAGGTGCATATAATGAAGTCTGATGTCCTAAAGTATCATTGGACCAGGCACCCTTG 146451 Query 96309 AAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACT 96368 || ||||| |||||||| ||||| | ||| | | | ||||| ||| | | ||| | | | Sbjct 146450 AAGTCGTAACTCATGAGGAATATGTGGTCCATGTAGTTTTGGGCAGCTTTGTAGTCGATT 146391 Query 96369 ACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGTT 96428 || ||| ||||| |||||||||||| || ||| | ||||| | ||||||||| Sbjct 146390 ACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAGTTCGTATTTCTTGCCCGTT 146331 Query 96429 TGCAGTTGCAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAATGTTGTACGTGTCA 96488 || || || |||| |||||| |||||| || || | | ||| ||| || ||| Sbjct 146330 TGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCATCAATATGACGTAAGTTTCA 146271 Query 96489 GCGTCGCGCTCTTT---GTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCC 96545 || ||||| | ||||||| || ||| || ||||| || || || || ||| Sbjct 146270 CCG------TCTTTCGGGCTGCCGAGTTTCTCGTTAGCTCCTTTGCCTCCGGGGAACTCC 146217 Query 96546 CAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCT 96605 ||||||||||| | ||||| || | |||||| | | || || | | || | Sbjct 146216 CAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAACTCCTTCGCTGAAGCG 146157 Query 96606 ACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATAGAACGGGTCGGACAGTGTCCAG 96665 || || | | | || | | ||| | | | | |||| || || | || |||||| Sbjct 146156 ACGAAACGGTGTCTCTTAACTGGGTCATCGAAGAAGAAGAAAGGATCTGCGAGGGTCCAG 146097 Query 96666 CCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGA 96725 || || ||||| || ||||| || | | || | || |||| ||||||||| || Sbjct 146096 CCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTTCAACGCCATCAATTGG 146037 Query 96726 CCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACT 96785 || || ||||||||||| || || ||||| | ||| | || || || || || || | Sbjct 146036 CCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTTCTGTGGCTTCTGCAAA 145977 Query 96786 GCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGC 96845 |||||||| || || ||||| | || |||| ||| || || ||| ||||||||| Sbjct 145976 GCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCCAGAGCATGAGCGTTGC 145917 Query 96846 AGCGCTTCAAAACTACC--GGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCAC 96903 | ||||| |||||||| | | | || || | || || | ||| || || |||| Sbjct 145916 AACGCTTGGAAACTACCTTCGATTTCCTTCAAACTG--TCATTGATGCCATCACCACCAC 145859 Query 96904 AAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCG 96963 | || || || || || || | || ||| | || || || | || || || || | Sbjct 145858 AGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGGGACACGATCGACTG 145799 Query 96964 GAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 || | || || |||||||||||||| ||||| ||||| Sbjct 145798 GATACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGC 145759 >seq2618 Length=201275 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || ||||| || ||||| || |||| || || ||||| ||||| || |||||||||||| Sbjct 161627 TAACCTCCACGAAGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCG 161686 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | | || | | |||||||||||||| || || | || | ||||||||||| | Sbjct 161687 GAAAGAGTACGGCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGA 161746 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | || || ||||| |||| |||||| | | | ||||||| | |||| Sbjct 161747 GGAATTCCTTCCTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCC 161806 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || || || ||||| || || ||||||||||| Sbjct 161807 ACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCATTTT 161859 >seq2177 Length=268633 Score = 100 bits (110), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 || |||||||| |||| || |||| |||||||| | || |||| ||||||||| Sbjct 252175 GGGGGCGTGGGTTTGAACCTCTGCGGCGCTAACCACCTGCTACTGCTGGACCCGCACTGG 252116 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACGC 29463 ||||||||| ||||| ||||||||||| ||||||| |||| |||| ||| ||| | | Sbjct 252115 AACCCGCAGCTGGAGGAGCAGGCGCAGGACCGCATCTACCGCGTGGGGCAGACCAAGCCC 252056 Query 29464 GCGCACGTGTACA 29476 | |||| | |||| Sbjct 252055 GTGCACATATACA 252043 >seq286 Length=933739 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || || ||||| || ||||| || |||| | ||| | || Sbjct 377839 AGGACTAGATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCT 377780 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | ||||| ||||||||||| ||| | |||||||||||| Sbjct 377779 TCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCC 377720 Query 16844 GCAATTTGCTGC-TTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| ||| || || | | | ||||| ||||| ||||| |||||||| Sbjct 377719 TGAATTT-TTGCTTTAACGTTTTCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGT 377661 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || ||||| || ||||||||||| |||||| Sbjct 377660 TTTACCAGTCAGGGTCTTGACAAAAATTTGCATT 377627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || || |||||||| ||||| || |||| | ||| | | || |||||||| Sbjct 377602 TGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATCTTCCAATTGC 377543 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT-- 16850 || || ||| ||||||||| || ||||| ||| | |||||||| || ||||| Sbjct 377542 TTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATCTTGAATTTTA 377483 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | |||||| || || || | || |||||||| || | Sbjct 377482 GCT--TTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGTTTTACCCG 377425 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| |||||||||||||| || Sbjct 377424 TAAGAGTTTTCACAAAAATCTGCATCTT 377397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || || ||||| || ||||| || |||| | ||| | || Sbjct 379207 AGGACTAGATGGAGAGTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCT 379148 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || ||| | ||||| ||||||||||| ||| | |||||||||||| Sbjct 379147 TCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCC 379088 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | ||||| ||||||| |||| |||||||| Sbjct 379087 TGAATCTTGGCCTTGACGTTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTC 379028 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||| || || ||||| || ||||| Sbjct 379027 TTTCCTGTCAATGTCTTTACAAATATTTGCAT 378996 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| ||||| || || |||||||||| | || | || Sbjct 379435 AGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCT 379376 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| |||||| || || | || || ||||| ||||| ||| | |||||||||||| Sbjct 379375 TCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCC 379316 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||||| |||||| |||| |||||||| Sbjct 379315 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTC 379256 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||| || || ||||| || ||||| Sbjct 379255 TTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 >seq170 Length=994537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 19397 GCACGGTTTTCATGTGCACGAGTTTGGTGATACCAGCAACGGGTGCACGTCAGCAGGCGA 19456 ||| ||||| || ||||||||||| || || | || ||||| |||||||| || ||| Sbjct 674290 GCATGGTTTCCACGTGCACGAGTTCGGCGACAACACGAACGGCTGCACGTCCGCGGGCCC 674231 Query 19457 GCATTTTAACCCCACGCATCAACAGCATGGTGCCCCCGACGCCGCAGAGCGGCACGTTGG 19516 ||| || ||||||||| | || |||| || |||||| |||| | | ||||||| || Sbjct 674230 GCACTTCAACCCCACGAAGCAGGAGCACGGCGCCCCCAGCGCCAGCGTGAGGCACGTGGG 674171 Query 19517 TGACCTGGGCAAC 19529 ||||| |||||| Sbjct 674170 CGACCTCGGCAAC 674158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405070799457160