Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq209 450 2e-121 seq995 123 3e-23 >seq209 Length=133430 Score = 450 bits (498), Expect = 2e-121 Identities = 1184/1792 (66%), Gaps = 24/1792 (1%) Strand=Plus/Minus Query 61828 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 61887 ||| | |||| ||| || | |||||||||||| | | | || ||||| || |||| Sbjct 15051 TTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAA 14992 Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 |||||||||||| ||||| || || | |||| | ||||| || || |||| || Sbjct 14991 ATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTT 14932 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 |||| | || || || | ||| || || | |||||| ||||| || ||||| || || Sbjct 14931 TCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACC 14872 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62066 ||| || |||||||||| || | ||||| || |||||||||| || ||||| || Sbjct 14871 CCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAA 14812 Query 62067 CTCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTGCCATAA 62123 || | | || |||| || | | || | |||| ||||| || ||| | || | Sbjct 14811 ATCTC-TGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTA 14753 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 | ||| || || || |||| |||||| | | | || ||| | ||||| | || Sbjct 14752 TAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTGGT 14693 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTAT 62240 |||| || ||||||||||||||||| ||||| ||| || ||||| || ||| Sbjct 14692 GATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGTAA 14636 Query 62241 ACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTG 62300 | ||||| | || |||||||| || | |||||| ||||| ||||| || ||||| |||| Sbjct 14635 ATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTG 14576 Query 62301 CCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAAT 62360 | | | ||| || | |||||| | || ||||| || || ||| ||| | Sbjct 14575 CTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGT 14516 Query 62361 TCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-G 62419 ||| | ||| || ||| ||||| ||| || | |||||| | Sbjct 14515 CCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTG 14456 Query 62420 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 62479 || |||| |||| || ||| ||| || ||||| || ||||||| || || || Sbjct 14455 GAC-TTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 62480 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG--CGCTTCCAGGC 62537 || || || || || || ||||| || || || || || | |||| |||| | | Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGTT-CAACTTGATAGCTTTCTCAC 14339 Query 62538 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 62597 | ||| ||||| | | | || ||| | ||| |||| |||||||| ||||| || | Sbjct 14338 TTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTA 14279 Query 62598 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62657 | || ||||| || ||| ||| ||| ||||||||||| || ||| | || | ||| | Sbjct 14278 TGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAA 14219 Query 62658 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62717 | ||||| || |||||| |||| |||| ||| || || | || ||||| | Sbjct 14218 TTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGA 14159 Query 62718 ATCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTA 62774 | |||| ||| ||||||||||| | ||| | || |||| |||||| || || | Sbjct 14158 AAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAA 14099 Query 62775 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 62834 | |||| | | || | || || ||||| || ||||| || || || || || | Sbjct 14098 CTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGC 14039 Query 62835 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 62894 | | ||||| |||||| || ||| | || || | |||||||| | ||| | || || | Sbjct 14038 CAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTC 13979 Query 62895 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 62954 |||| || | |||| ||||| ||| |||||||| | | | || |||| | | | Sbjct 13978 CAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACT-TGCTTA 13920 Query 62955 TGTATC-TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63013 | | | |||||| ||| ||| | ||| | ||| ||||| ||||||||| | Sbjct 13919 ACAAACTTTTTTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCCAACAA 13860 Query 63014 TTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 | || ||||| || |||| |||||||| | ||| | | ||| | | || Sbjct 13859 TCTGAAAGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAACC 13800 Query 63074 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 63133 | ||||||||| | ||| || ||||||||||| ||| | ||||| | | ||| Sbjct 13799 CTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTCT 13740 Query 63134 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63193 || || |||||||| ||||| ||||| | ||| | | |||||| | |||||| |||||| Sbjct 13739 TCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTCC 13680 Query 63194 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63253 ||||| || || | | ||||| | || || || || ||||||| |||||||| ||| Sbjct 13679 AAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGTG 13620 Query 63254 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATA 63313 || ||||| ||||| |||||||| | | ||||| || ||||| || || | || Sbjct 13619 TTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTATG 13560 Query 63314 TAGCTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63372 ||| || | || | ||| | || || ||||||||| || || || ||| || Sbjct 13559 TAGGACCCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGCTGATTTTGA 13501 Query 63373 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432 || | ||| ||| |||| | |||||||| || || || ||||| || || |||| Sbjct 13500 AATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCATAGC 13441 Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 | || ||||| ||| | || | | ||| | ||| || | || ||| Sbjct 13440 TATTAAGAAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGACT 13381 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 || || ||||| |||||||||| | | ||||| || | || || | || | ||| Sbjct 13380 TGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAACATC 13321 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 ||| ||||| | ||| || | ||| | ||| ||||| ||||| ||| Sbjct 13320 TTCACCATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTCA 13269 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| || |||||||||| ||| || ||| |||||||||||||||| |||||||||||||| Sbjct 13089 CTTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTA 13030 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||| |||| || || | || |||| | ||| | ||||| Sbjct 13029 CTTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTT 12985 >seq995 Length=359585 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || ||| ||| | ||||| || || | ||| ||||| || |||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || ||||| ||||| |||||| ||||| ||||| || || || || |||| Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 32857 |||||| ||| || || || | || ||| || |||||||| | |||||||| Sbjct 124943 CAATAATTCTTTCACC--AAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATC 125000 Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||||||| |||||||| || | ||| || || ||||| || Sbjct 125001 TGCCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| |||||||||||| || ||||| || || || || ||||| || ||||| | | Sbjct 125690 TTCGATAAATCCACTTCTTCGACAGTCCAGAAAGACGCTTCAGCCTTCTTGTACATTTGC 125749 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 |||||||| | |||| ||| || || |||||||||| Sbjct 125750 CAGATGTCTGGGTATTTAATAGGGAAGATAACAAATC 125786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633604405326400