Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq3433 288 1e-72 seq170 109 6e-19 >seq3433 Length=253125 Score = 288 bits (318), Expect = 1e-72 Identities = 546/791 (69%), Gaps = 17/791 (2%) Strand=Plus/Minus Query 51655 AGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGC 51714 |||| || |||||| |||| | || ||||| | || || | | || ||||| | | Sbjct 146539 AGTCAGTTGTGTACGTTTCCTTCGGATTCCACTCAGGTGCATATAATGAAGTCTGATGTC 146480 Query 51715 CCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCA 51774 | | | |||||||| ||||||||||| ||||| |||||||||| |||| |||| Sbjct 146479 CTAAAGTATCATTGGACCAGGCACCCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCA 146420 Query 51775 ACTGCGTCTGCGCCCGAGC---GTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGA 51831 | | || || ||| |||||||| |||||||| || || |||| || |||| Sbjct 146419 TGTAGTTTTGGGC---AGCTTTGTAGTCGATTACTTGAATCTTGTCCCAGCCGGCACTGA 146363 Query 51832 TGGCGCTGGTCAACAGGTACGAACGGTTCGTG-GCGGCGCTCAACTCGTCGAGCATGTCG 51890 | || || | ||| | ||| | | | | || |||| | ||| ||| Sbjct 146362 TAGCTGATGTGAGTTCGTATTTCTTGCCCGTTTGAAGAGAT-AATTCGTTTAACATTTCG 146304 Query 51891 CGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCG 51950 |||||||| ||| | | ||||| || |||| || ||||| | ||| || | Sbjct 146303 CGCAGCTCTTTCATCAATATGACGTAAGTTTCACCGTCTT--TCGGGCT-GCCGAGTTTC 146247 Query 51951 GGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTC 52010 || || |||||||| || || ||||||||||||| ||||| ||||| || | ||| Sbjct 146246 TCGTTAGCTCCTTTGCCTCCGGGGAACTCCCAGTCGATGTCGAGACCGTCAAACATTTTC 146187 Query 52011 CAAGTCAGCAGAAACTCGCGAACCGATTCGACGAA--GGTTGCGCGTTTGCTCGCGTCGT 52068 || || || || ||||| | || ||||||| ||| | | || || | ||| | Sbjct 146186 CAGGTTAGAAGGAACTCCTTCGCTGAAGCGACGAAACGGTGTCTC-TTAACTGG-GTCAT 146129 Query 52069 GCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCG 52128 | ||||||||| ||||| | || ||||| || || || || || |||||||| | Sbjct 146128 CGAAGAAGAAGAAAGGATCTGCGAGGGTCCAGCCACCAATAGATGGGAGAATCTTCAAAT 146069 Query 52129 AAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCC 52188 ||| |||| |||| |||||||| || || || || || ||||| || || |||| Sbjct 146068 CAGGCCTGGCTTGTTTCAACGCCATCAATTGGCCGAAATTGCCTTTGTAAGGTTCATTCC 146009 Query 52189 AGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCT 52248 ||| |||| |||||||| || ||||||| || ||||||||||| ||||||| |||| Sbjct 146008 AGGAAGAGAGTCCTTTCTGTGGCTTCTGCAAAGCGGCCCAGGGATCATGAATCGACACCG 145949 Query 52249 TAAAGTCCGACCTGCCCAC-GCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGT 52307 ||||||| | ||||| ||| || ||||||||||||| |||||| ||||| Sbjct 145948 TAAAGTCTTCGC-GCCCAGAGCATGAGCGTTGCAACGCTTGGAAACTACCTTCGATTTCC 145890 Query 52308 TTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGC 52367 |||| ||||| |||||||| || || || || || || |||||||| || |||||||| Sbjct 145889 TTCAAACTGTCATTGATGCCATCACCACCACAGATCGGGATGAAGCCATATAGCAGATGA 145830 Query 52368 GACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCG 52427 | | || || | || || |||| || ||| | || ||| ||| |||||||||||| Sbjct 145829 GTTAAATTAGGAATGGGGACACGATCGACTGGATACTTTCGCGGGTACACGCCCCATTCG 145770 Query 52428 ACAAAGTAGGC 52438 |||||||| || Sbjct 145769 ACAAAGTACGC 145759 >seq170 Length=994537 Score = 109 bits (120), Expect = 6e-19 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 127543 GCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGGA 127602 ||| || || |||||||||||||||||||||| ||||||| |||||||| ||||| Sbjct 674290 GCATGGTTTCCACGTGCACGAGTTCGGCGACAACACGAACGGCTGCACGTCCGCGGGCCC 674231 Query 127603 ACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCACGTTGG 127662 |||||||| ||||| ||| ||||| || |||| ||| ||| | ||||| || Sbjct 674230 GCACTTCAACCCCACGAAGCAGGAGCACGGCGCCCCCAGCGCCAGCGTGAGGCACGTGGG 674171 Query 127663 CGACCTGGGCAACGTGGAGGCGGCTAGCAGCAAT 127696 |||||| |||||| | || |||||||||| || Sbjct 674170 CGACCTCGGCAACATCGA---GGCTAGCAGCGAT 674140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537579787380640