Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq286 127 2e-24 seq2763 100 2e-16 seq170 82.4 6e-11 >seq286 Length=933739 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| ||||| | || || ||||||||||| | || ||||| Sbjct 377397 AAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAACCG 377456 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || | | | |||||| |||||| || ||||| || |||| ||| Sbjct 377457 TCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTCCTCCCGAC 377516 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || ||||||||||||| ||| || || |||||||||||| | || | |||||||| Sbjct 377517 CAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATTAT 377576 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| |||||||| || || ||||| |||||||| || ||||| Sbjct 377577 AACATTCAAAAGGAATCTACCCTTCACTTAGTTTTGCGTCTTCGTGGTGG 377626 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||||||||||||||| || |||| || |||||||| || ||||| || || Sbjct 377627 AATGCAAATTTTTGTCAAGACCCTGACTGGTAAAACCATCACATTGGAAGTAGAGCCTTC 377686 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || ||| ||||||| |||||||| ||| |||| || || Sbjct 377687 TGACACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAAGAGGGCATTCCTCCAGACCA 377746 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | ||||| | ||| || ||||| | |||||| | || | |||||||||| Sbjct 377747 ACAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAA 377806 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || ||| |||| | |||||| | ||||| Sbjct 377807 CATTCAGAAGGAATCTACCCTCCATCTAGTCCTTCGTCTGAGAGGTGG 377854 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || ||||| ||||| |||| |||||||| || || | ||| ||||| Sbjct 780855 AATGCAGATCTTTGTGAAAACATTGACTGGCAAAACAATAACGCTAGAAGTAGAACCATC 780914 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | ||||| || ||| || || ||||| | || || || Sbjct 780915 GGATACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 780974 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 111363 ||| | ||||| | ||| || || |||||||||||| | | ||| | | ||||| Sbjct 780975 ACAGCGACTTATCTTTGCTGGAAAGCAATTGGAAGATGGGCGTACACTCT--CTGATTAC 781032 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| ||||| ||||||||| | |||||||| ||||| || | ||||| Sbjct 781033 AATATCCAAAAGGAATCTACATTGCATTTAGTACTGCGTTTGAGAGGTGG 781082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| | || ||||| || ||||| | ||| |||||| Sbjct 781768 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATTACTTTAGAAGTGGAACCATCA 781827 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||||| || || ||||| | || ||||| Sbjct 781828 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCTCCTGATCAG 781887 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATA 111364 || | ||||| | || || || |||||||| ||| | | ||||| | ||||||| Sbjct 781888 CAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGCCGTACACTAT--CAGATTATA 781945 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| || ||||| || ||||| |||||||| || |||||| | || || Sbjct 781946 ATATCCAGAAAGAGTCGACACTGCATTTAGTATTACGTCTGAGAGGAGG 781994 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||| || || ||||| || ||||| ||||| Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || |||||| ||||||||||| | || || || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || |||||| |||||||| | ||| | ||||||| ||| Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || |||||||| | |||||| | ||||| Sbjct 379632 ATCCAGAAGGAATCCACTCTCCATTTAGTCCTTCGTCTGAGAGGTGG 379678 >seq2763 Length=379199 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || || |||||| | || || | |||||||||||| ||||| || || || ||||| Sbjct 320160 AATGGATTTTACTATCTCGGTCGTGGGGACGAAGTGCGTTGCGCCTTTTGTAAGGTGGAG 320101 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 |||||| | ||| || ||||||||||| || ||||||| |||||||||| || || Sbjct 320100 ATAATGAGATGGGACGAAGGCGACGACCCAGCTAAAGATCATCAACGATGGGCACCGCAA 320041 Query 105282 TGCCCGTTTTTGCGA 105296 || || ||| || || Sbjct 320040 TGTCCTTTTCTGAGA 320026 >seq170 Length=994537 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 107645 GTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGCGT 107704 |||||| | ||||| ||||| | | | |||| ||| ||||| |||| ||| | ||| Sbjct 674158 GTTGCCGAGGTCGCCCACGTGCCTCACGCTGGCGCTGGGGGCGCCGTGCTCCTGCTTCGT 674217 Query 107705 AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGCAC 107764 || || ||||| ||| || |||||||| || || | ||||||| || |||||||| Sbjct 674218 GGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCCGAACTCGTGCAC 674277 Query 107765 GTGAAAACCGTGC 107777 ||| ||||| ||| Sbjct 674278 GTGGAAACCATGC 674290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423022037192800