Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq2170 111 4e-21 >seq2170 Length=486103 Score = 111 bits (122), Expect = 4e-21 Identities = 244/359 (68%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 3167 CGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTCAACGTTG 3226 ||||||||| ||||| | | | |||| ||| || || | |||||| ||||||| | Sbjct 52740 CGCAAAACTTCTACGCGTTCCGTTTCTTTATCTGTGAAGTGTTGAACTTTATCAACGTCG 52681 Query 3227 TCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTACGGAATCT 3286 ||| ||| |||| ||||||| | || | | | || |||| | ||||| Sbjct 52680 TCGGACAAATATACTTCATGGACTTTTTCTTGGATGGTGAATTTTCGACTTACGGCCGTG 52621 Query 3287 ATGTTACCTTCTTCAACCAGGAA-GCCGCCCATCCGAACATGACGAACCCCATGAAGCGA 3345 | || | ||||| ||| || | |||| || | ||| || ||||||| || Sbjct 52620 ACGTCGTCCGCTTCA--CAGAAATGGAGCCCGAA-GAGCGTGAAGA-CCCCATGGCCCGG 52565 Query 3346 GTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAA 3405 || ||||| | | | || ||| || || |||||||||||||||||||| || || | Sbjct 52564 GTGTTTCCTAAAGTTACAAAATGCACATTCCACAAATACGGTCCTTCGGGAACCGTGCAG 52505 Query 3406 AACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTC 3465 || | ||| || |||||| | | ||| |||| | || ||||| ||||||||| | ||| Sbjct 52504 AAGTTCGACGGGCTCTGCGTGTTGCCGTTGAACATCGTAAACGAAAAGATCTACGTGTTC 52445 Query 3466 CTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGG--TATCGTTGTTCTGTACCGC 3522 || |||||||||||| | | || | || | || || |||| |||| |||||||| Sbjct 52444 CTGTGGTTCTGGTTCATCATCCTTTCGATTTTGAGTGGCATATCTTTGT--TGTACCGC 52388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479524434000