Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq2627 125 5e-24 seq2618 91.5 1e-13 seq180 87.8 1e-12 seq3295 84.2 2e-11 seq2891 84.2 2e-11 >seq2627 Length=883029 Score = 125 bits (138), Expect = 5e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 108769 TACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGAC 108828 |||||| ||| ||||||| | |||||||| ||||| || || ||||||| || |||||| Sbjct 222758 TACGCCTTCATCCTCAACGTCACGTGGCTCGTCAACTCCGCCGCGCACAAGTGGGGCGAC 222699 Query 108829 CGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTC 108888 || | |||||||||||| || ||||||| | |||| | ||| |||||| Sbjct 222698 AAGCCCTACGACAAGAACATCCAGCCTTCCGAAAACATCTCGGTGTCCCTGTTCGCTCTC 222639 Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 |||||||| | ||||||||||||||| ||||| | |||||||| | |||||| | Sbjct 222638 GGCGAGGGCTTCCACAACTACCACCACACCTTCCCGTGGGACTACAAAACGGCCGAGCTC 222579 Query 108949 GGGAACGAC 108957 || ||| || Sbjct 222578 GGCAACAAC 222570 >seq2618 Length=201275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 108784 AACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGACAAG 108843 ||| | |||||||| |||||||| || || |||| || |||| | || | ||| ||| Sbjct 63751 AACGTGACGTGGCTCGTCAATTCCGCTGCCCACAAGTTCGGCAGCAAGCCCTACGATAAG 63810 Query 108844 AACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCAC 108903 ||||| ||| |||| |||| || || | | | |||| || || | ||| Sbjct 63811 AACATCAACCCCGTCGAAACCAAACCTGTAGCTTTGGTCGTGTTCGGGGAAGGCTTCCAC 63870 Query 108904 AACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGACT 108958 |||||||||||||| ||||||| ||||||||| |||| ||| | || ||| ||| Sbjct 63871 AACTACCACCACGTTTTCCCCTGGGACTACAAGACCGCTGAGCTTGGCAACTACT 63925 >seq180 Length=487548 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 118174 GTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCA 118233 ||| |||||| || || || | ||| ||| || || || || |||| || ||||||| Sbjct 28248 GTTCTCCGTCCCGGCCCGCGCGGCCTGCCTCCTGGTAGTAGCCCTCCACGGACTTGGGCA 28307 Query 118234 TACTGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCG 118293 | ||||| || ||||| |||||||||| | || || | |||||| ||||||||||||| Sbjct 28308 TGCTGTGGTGGATCACGTACCGCACGTCCGCCTTGTCCACGCCCATGCCGAACGCTATCG 28367 Query 118294 T 118294 | Sbjct 28368 T 28368 >seq3295 Length=199815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| || ||| |||| ||||||| | | || || ||| | |||||||| ||| || Sbjct 199375 TGGGTGCGGGACCACCGGGTGCACCACAGGAAGTCGGAAACGTCCGCCGACCCTCACGAC 199316 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCC 108581 |||| | || || | ||| |||| ||||| ||||||||||||| ||| |||| Sbjct 199315 GCCACGCGCGGCTTTTTCTTCGCGCATGTGGGCTGGCTCATGATGAAGAAGCACCC 199260 >seq2891 Length=78256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| || ||| | || ||||||||| || || ||| | |||||||| ||| || Sbjct 61493 TGGGTGCGGGACCACCGCGTGCACCACAAGAGGTCGGAAACGTCCGCCGACCCTCACGAC 61552 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCC 108581 |||| | || |||| ||| |||| ||||| ||||||||||||| ||| |||| Sbjct 61553 GCCACGCGCGGCTTCTTCTTCGCGCATGTGGGCTGGCTCATGATGAAGAAGCACCC 61608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| || ||| | || ||||||||| || || ||| | |||||||| ||| || Sbjct 70323 TGGGTGCGGGACCACCGCGTGCACCACAAGAGGTCGGAAACGTCCGCCGACCCTCACGAC 70382 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCC 108581 |||| | || |||| ||| |||| ||||| ||||||||||||| ||| |||| Sbjct 70383 GCCACGCGCGGCTTCTTCTTCGCGCATGTGGGCTGGCTCATGATGAAGAAGCACCC 70438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381756589449696