Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq286 116 4e-21 seq2618 93.3 5e-14 >seq286 Length=933739 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||||| |||| |||||||||| || || |||||||| || || || Sbjct 781538 CCACCTCTCAAACGCAGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCAGAA 781479 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || || ||||| || ||||| || | | ||||||||| | || Sbjct 781478 AGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGGG 781419 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||| || ||| | | | | ||||| | |||||| Sbjct 781418 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCCACT 781359 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||||||||| |||| || ||||||||||| ||||| Sbjct 781358 TCCAATGTGATGGTTTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 781312 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| |||||||| | || || || || || || ||||| Sbjct 379414 TCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAG 379355 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | || ||| |||||| || || ||||| || Sbjct 379354 ATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTC 379295 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||||| |||| |||||||| || || |||| || || ||| Sbjct 379294 TCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACA 379235 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 379234 AATATTTGCAT 379224 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | || ||| | |||| || || ||| |||||| ||||| ||||| Sbjct 380141 TTAATTTCCGCCGCGTAGACGAAGTACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTA 380082 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || |||||||| | || || || || || || || || |||| ||||||||||| Sbjct 380081 GTCTGAAAGAGTGCGACCATCTTCTAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTC 380022 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | | || |||||| || || ||||| || | | ||||| | Sbjct 380021 TGGAGGGATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGG 379962 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| |||||||| || || |||| || || |||||||||||||| Sbjct 379961 TTCGACTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAAGATTTGCAT 379908 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || |||||||| | || || || || || || ||||| Sbjct 378730 TCCTTCTGGATATTGTAGTCCGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAA 378671 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | | || ||||| ||||| ||||| || Sbjct 378670 ATCAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTC 378611 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || |||| |||||||| || || |||| || || ||| Sbjct 378610 TCAATTGTGTCCGAAGGTTCAACTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTACA 378551 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 378550 AATATTTGCAT 378540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||||| || | ||| |||||| |||||||||||||| || || || Sbjct 781310 CCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGAA 781251 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||| || || || || || | | ||||||||| | || Sbjct 781250 AGAGTGCGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGG 781191 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||| || ||| | | | | ||||| | ||| || Sbjct 781190 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCAACT 781131 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| || | || ||||||||||| ||||| Sbjct 781130 TCCAATGTGATTGTCTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || |||||||| | || || || || || || ||||| Sbjct 378274 TCCTTCTGAATATTGTAGTCTGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAG 378215 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | | || ||||| ||||| ||||| || Sbjct 378214 ATCAGACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTC 378155 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||||| |||| |||||||| || || |||| || || ||| Sbjct 378154 TCAATTGTGTCAGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACA 378095 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 378094 AAGATTTGCAT 378084 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| ||||| |||||||| | || || || || || || || || Sbjct 379642 TCCTTCTGGATATTGTAATCGGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCAAAG 379583 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||||| | || | | || |||||| || || ||||| || Sbjct 379582 ATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTC 379523 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || |||| |||||||| || || |||| || || ||| Sbjct 379522 TCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 379463 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 379462 AATATTTGCAT 379452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | || ||||| | ||| ||||| || || || || ||||| Sbjct 377854 CCACCTCTCAGACGAAGGACTAGATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAG 377795 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| || || || || || | ||||| ||||| | || Sbjct 377794 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGA 377735 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGATTCCAC 46545 | || ||| |||||| ||| || | ||| | ||| || ||||| | || || Sbjct 377734 ATGCCCTCTTTGTCC-TGAATTTTTGCTTTAACGTTTTCAATTGTGTCAGAAGGCTCTAC 377676 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || ||||| || || ||||| ||||||||| Sbjct 377675 TTCCAATGTGATGGTTTTACCAGTCAGGGTCTTGACAAAAATTTGCATT 377627 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || | ||| |||| ||| | ||| ||| ||||| ||||||||||| ||| Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGAT 782163 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || ||||| || || || || ||||| | |||||||| | || Sbjct 782162 AATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGA 782103 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| || || || ||| | || | | ||||| | |||||| Sbjct 782102 ATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACT 782043 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || ||||| || | ||||| || || |||||||| Sbjct 782042 TCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 >seq2618 Length=201275 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| || | || || | || || || ||||| Sbjct 161666 TCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCCTCCAATTGTTTACCAGCGAAG 161725 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| ||||| | || | | |||||||| ||| || ||| | | Sbjct 161726 ATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTCACATTT 161785 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||||| || | |||||||| || ||||| || ||||| || Sbjct 161786 TCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTTACG 161845 Query 46583 AAGATTTGCATTTT 46596 ||||| |||||||| Sbjct 161846 AAGATCTGCATTTT 161859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565213783867680