Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3433 179 3e-40 seq286 104 2e-17 >seq3433 Length=253125 Score = 179 bits (198), Expect = 3e-40 Identities = 782/1219 (64%), Gaps = 36/1219 (3%) Strand=Plus/Minus Query 5815 TATTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCC 5874 ||||||||||| | ||||||| || | || ||||| || || || || ||||||| Sbjct 146950 TATTGCCCAAAGCCATGTTCATACTGTTCAGAATGTCACCATTATCTGCATCAATTTCCC 146891 Query 5875 ACGCAAATAAACCACCCAAAT---TTTTGCTCACTACATACTTACCTTTTGCTACCACCG 5931 |||||||||| |||||||||| |||| ||||| || |||||||| | || | Sbjct 146890 ACGCAAATAATCCACCCAAATAATTTTTCCTCACG---TATTTACCTTTCTCAGTAACGG 146834 Query 5932 ATTGATCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATT 5985 || |||||||||| || ||||| || | | || || | || || || | || Sbjct 146833 ATCTCGCGTTGTCGTATGTGACTAAGTCTCCAGTGGATGGTCTGAACACATAAGGTGCTT 146774 Query 5986 GTGCAATGTTATCATAG---AATTGTACACTTTCGTCGTACCTATTTA----CAATATCT 6038 | || | ||| |||||| || | || || | | || | || | | || || Sbjct 146773 GAGCTACGTTGTCATAGTGGAACTCC-CATTTGCCTTGTGCAATTTCATTAGCGATCTCC 146715 Query 6039 TTATAATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTA 6098 |||| || | |||||| | |||||| || || || | | || | ||| | Sbjct 146714 CTATAGTCCACAACGCCGTCCTGCCATGTTCCCTTGCAAGGTCCTGTCGCAACTCCAGAG 146655 Query 6099 AACGGATTATTGT-TTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCAC 6157 || |||||| | ||| | ||| || || ||| |||| || || ||||||||||| || Sbjct 146654 AAGGGATTACCCTCTTTATAATCG-TGTACTCCGGTCCACCCACGGCCATACATAGCGAC 146596 Query 6158 ACCTACTACTAATTTAGTCGAATCGACATTTTGATTTAACAAT--CTGTTAATAGCAAAA 6215 |||||||| | || | | | |||| |||| |||||| |||| | | | || Sbjct 146595 GCCTACTACAATCTTCTTAGGGTTGACACCTTGAGCTAACAAGTACTGT--ACACCGAAG 146538 Query 6216 TGGGTTGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCC 6275 | |||||||| |||| || | |||| ||| || || | | || ||| || Sbjct 146537 TCAGTTGTGTACGTTTCCTTCGGATTCCACTCAGGTGCATATAATGAAGTCTGATGTCCT 146478 Query 6276 AAATTTTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGA 6335 ||| | || ||||||| || || || || ||||| |||| | ||||| | || | Sbjct 146477 AAAGTATCATTGGACCAGGCACCCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCATG 146418 Query 6336 TAGCGTTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCG 6395 ||| ||| || || | || |||| || | || ||||| | ||||||| |||||| Sbjct 146417 TAGTTTTGGGCAGCTTTGTAGTCGATTACTTGAATCTTGTCCCAGCCGGCACTGATAGCT 146358 Query 6396 CTAGTTAGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAAC 6455 || |||| || || || | | |||| ||| | ||||||||| | | Sbjct 146357 GATGTGAGTTCGTATTTCTTGCCCGTTTGAAGAGATAATTCGTTTAACATTTCGCGCAGC 146298 Query 6456 TCCTTTAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTG 6515 || || | | ||| || |||| | || | | | |||| || | ||| Sbjct 146297 TCTTTCATCAATATGACGTAAGTTTCACCGTC---TTTCGGGCTGCCGAGTTTCTCGTTA 146241 Query 6516 GCACCTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTT 6575 || ||||| || || || |||||||| || ||||||| ||||| || | |||||| ||| Sbjct 146240 GCTCCTTTGCCTCCGGGGAACTCCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTT 146181 Query 6576 TCCAAAAATTCGCGCACACTATCAAC-AAACGTATTTCGTTTTTCGACGTCGTTTAACTG 6634 | || || | | | | || ||||| | || || | ||| | || Sbjct 146180 AGAAGGAACTCCTTCGCTGAAGCGACGAAACGG-TGTCTCTTAACTGGGTCATCGAAGAA 146122 Query 6635 GTAAAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATT 6694 | | || ||||| || ||||| || || || ||||| | || | ||||| || | Sbjct 146121 GAAGAAAGGATCTGCGAGGGTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCT 146062 Query 6695 GTGGCGCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTC 6754 | | || | |||||| || || || || || |||||||| ||||| || ||| Sbjct 146061 GGCTTGTTTCAACGCCATCAATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGA 146002 Query 6755 GACACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATC 6814 || ||||| ||||| || || | || |||| ||||||||| | || | || || Sbjct 146001 GAGTCCTTTCTGTGGCTTCTGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTC 145942 Query 6815 TTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAA 6873 || || || | ||| || ||||||||| | |||| | || | |||| | | || Sbjct 145941 TTCGCGCCCAGAGCATGAGCGTTGCAACGCTTGGAAACTACCTTCG-ATTTCCT--TCAA 145885 Query 6874 GCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAA 6933 | || || | ||||| || ||||| || || || || || || | || ||| || | Sbjct 145884 ACTG-TCATTGATGCCATCACCACCACAGATCGGGATGAAGCCATATAGCAGATGAGTTA 145826 Query 6934 GATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAA 6993 |||||||||||| | ||| | ||||| | || ||| || |||||||| |||| Sbjct 145825 AATTAGGAATGGGGACACGATCGACTGGATACTTTCGCGGGTACACGCCCCATTCGACAA 145766 Query 6994 AGTAAGCGCCCACAACATT 7012 |||| ||||| ||||| || Sbjct 145765 AGTACGCGCCGACAACTTT 145747 >seq286 Length=933739 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||| ||||| || || ||| ||||| ||||||||||| | Sbjct 781310 CCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGAA 781251 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| || | ||||| || ||||||| | | |||||| || | || Sbjct 781250 AGAGTGCGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTCTGGAGGG 781191 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| || | | | | ||||||| ||| || Sbjct 781190 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATAGTGTCTGATGGTTCAACT 781131 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || ||||| || || |||||||| || || ||||||||||| Sbjct 781130 TCCAATGTGATTGTCTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 781084 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||||||| ||||||||||| || |||||| || ||||||||||| | Sbjct 781538 CCACCTCTCAAACGCAGGACCAAATGCAATGTAGATTCTTTCTGGATATTATAATCAGAA 781479 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| || | ||| || || | ||||| | | |||||| || | || Sbjct 781478 AGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGGG 781419 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| || | | | | ||||| | |||||| Sbjct 781418 ATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCCACT 781359 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || ||||| || || ||||||||||| Sbjct 781358 TCCAATGTGATGGTTTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 781312 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| | ||| ||||||| || ||||| || ||||||||||| | Sbjct 781766 CCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGAT 781707 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||||||| || ||| | || || | |||||||||||| | || Sbjct 781706 AGAGTACGTCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 781647 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| || | || | | ||||||| ||| || Sbjct 781646 ATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCAACT 781587 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||| || || || ||||| || || || |||||||| Sbjct 781586 TCTAAAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || || ||||| | |||| ||| || || ||||| ||||||| Sbjct 379678 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAG 379619 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| |||||| || |||| || | ||||||||| || | || Sbjct 379618 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 379559 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | || | | |||||| | ||| || Sbjct 379558 ATACCTTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACT 379499 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || || || || || || || ||||| Sbjct 379498 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACAAATATTTGCAT 379452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || || ||||| | |||| ||| || || ||||| || || | Sbjct 378310 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAG 378251 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| |||||| || | || || | |||||||||||| | || Sbjct 378250 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 378191 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | || | | |||||| | | ||||| Sbjct 378190 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACC 378131 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || || || || || ||||| ||||| Sbjct 378130 TCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| | ||| ||||||| || ||||| || ||||||||||| | Sbjct 781994 CCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGAT 781935 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||||||| || ||| | || || | |||||||||||| | || Sbjct 781934 AGTGTACGGCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 781875 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||| || | || | | || |||| |||||| Sbjct 781874 ATACCTTCCTTATCTTGGATTTTAGCCTTCACATTCTCAATGGTATCTGATGGTTCCACT 781815 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || || || ||||| ||||| ||||| || ||||| Sbjct 781814 TCTAAAGTAATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| || || ||||| | |||| ||| || || ||||| || || | Sbjct 378766 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCCGAG 378707 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| |||||| || | ||||| | ||||||||| || | || Sbjct 378706 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGAGGA 378647 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | || | | |||||| | ||| || Sbjct 378646 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 378587 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || || || ||||| || || ||||| Sbjct 378586 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTACAAATATTTGCAT 378540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347354850252572