Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq209 500 1e-136 >seq209 Length=133430 Score = 500 bits (554), Expect = 1e-136 Identities = 1189/1790 (66%), Gaps = 38/1790 (2%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || || || | ||||| |||| |||| |||||| |||||||| ||||| || Sbjct 15038 TTATCAACTGTGAATTGAATTGCATTAGCAGCTGGTTTTGTGCGTAAATAGTACATTCCT 14979 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || | || | |||| |||| || || || ||||| || |||| ||||| Sbjct 14978 GTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAACTTTCCATAATTAGGT 14919 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 || | || |||||| || | |||||| || || ||||| |||||||| |||||||| ||| Sbjct 14918 TCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGCACCCCTATCAGCAGCC 14859 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | | | | | || ||| ||||| ||||| ||||| | | | | || ||| Sbjct 14858 ATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATACAAATCTCTGATTTCT 14799 Query 47214 TCTGGGA--GATTAG-TATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | || | | || ||||||||||||| || ||| | ||| || ||||| | Sbjct 14798 TTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTATTATAAGATTTTTCATG 14739 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaa--AAGATGAGGATTAACAATTT 47328 || | ||| | | | || || || | ||| ||| || |||| || | || Sbjct 14738 TCTTCATCCCATAAATCTGCTTGTGTCAAA-TCCCTAAGCAAG-TGGTGATTGACCACTT 14681 Query 47329 GAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGTTCTATAG 47385 ||||||||||||||| ||| ||| || ||| || || ||| ||||||| | | Sbjct 14680 GAAATTCTCCAGATAATAC---ACGTCTTTGATAAATGTTTGAAGTAAATGGTTCAAATG 14624 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 |||||||||| |||| |||||| ||||| ||||| || ||||||| ||| | || ||| Sbjct 14623 ATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTGCTAGTAGTAATG 14564 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 || | | |||| ||| || | ||| ||||| | ||||| Sbjct 14563 AGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCAGTCCCACAAATCTG 14504 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 |||| || ||| | ||||||||| | |||||||| ||| ||| || | || Sbjct 14503 ATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCTGGACTTCCTTCAT 14444 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 | || |||| || | | | || ||||||| ||||||||||| || | ||| | Sbjct 14443 AAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCCAAGGCGCCATAGT 14384 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTCAAAAGGATAN 47684 |||||||||||||||||| | ||| | || | |||| || | |||| | ||| Sbjct 14383 ATATTGTTTCAAATATTTGTTGGTTCAACTTGATAGCTTTCTCACT-TTCATATGGAATA 14325 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 || || || || | |||||||| ||||| || || || ||||| | Sbjct 14324 CGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTATGGGCCTATGCCTA 14265 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGA 47804 ||| || | ||||||||| | ||| || ||| | ||| || ||||| || ||| Sbjct 14264 AGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAATTATTTTGTTAAGA 14205 Query 47805 NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA-- 47862 | |||| |||| || | ||||| || | |||| | Sbjct 14204 TTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGAAAGTTTTATCTTCA 14145 Query 47863 -TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 |||||||| | || |||||||| || || | |||||| || || || |||| || || | Sbjct 14144 TTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAACTTCATCTG-ATGA 14086 Query 47922 -GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 || || | || ||||||| ||| ||||| | ||||| || || || | ||||| || Sbjct 14085 TGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGCCAAGATTTTTTTG 14026 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 ||| | | || || | |||||| || | ||| | ||||||||||| || | || Sbjct 14025 ATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTTCCAGTCTCCACTTG 13966 Query 48041 AGATTCAATGATAGATTTCCA-AACAGTCCTAGCCTTTA------TAACAGCTCTAGCTT 48093 || ||| | || | |||||| |||| || || |||| ||||| | ||| Sbjct 13965 AGCTTCTACAATTGCTTTCCATAACA-TCTGCGCTTTTACTTGCTTAACA-----AACTT 13912 Query 48094 TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTA 48153 | || || ||||| ||||| ||||| ||| ||||| || || || | ||| | | | Sbjct 13911 TTTT-TCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCCA-ACAATCTGAA 13854 Query 48154 AC-CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 | ||||| || |||| |||||||| | ||||| || | |||| || || || Sbjct 13853 AGGCCAGGGCAATCATGGGGACACATAATACTCCAATTTTCGTTTTTTTCAACCCTTTTC 13794 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||||| |||||||||||||||||| ||| || || || | | | |||||| || Sbjct 13793 ATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGACTTCTTCTTTC 13734 Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 || |||| |||| || || | || || | ||||| |||||||||||||| || || Sbjct 13733 CCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTCCAAGTAA 13674 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | |||| |||| ||||| || |||||||||| |||||| || || |||||| Sbjct 13673 ATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGTGTTGTTA 13614 Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452 || |||||||||||||| || | ||||| || | ||||| ||||| | || || Sbjct 13613 TATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTATGTAGGAC 13554 Query 48453 CCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAG 48511 || |||| |||||| | || || | |||||||||||| || ||| || || | Sbjct 13553 CCTTTAGCCCTTATACAATGTACATG-TAGACCTATACCACCAGCTGATTTTGAAATCAT 13495 Query 48512 AGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAG 48571 ||||| ||||||| |||||||| |||||||| ||||| || ||| ||||| || || Sbjct 13494 TGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCATAGCTATTAA 13435 Query 48572 AAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATG 48631 |||||| ||| | || || ||| | | | || | ||||||| |||||| Sbjct 13434 GAAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGACTTGCATG 13375 Query 48632 AATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTG 48691 |||| |||| || |||||||| || ||||| | || ||| ||| | ||| Sbjct 13374 TGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAACATCTTCACC 13315 Query 48692 ATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 |||||| || || | || | ||| | ||||| || ||||| ||| ||| Sbjct 13314 ATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTCTCTCAGCAA 13265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084320161760