Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2763 109 4e-19 seq286 98.7 8e-16 seq2862 91.5 1e-13 >seq2763 Length=379199 Score = 109 bits (120), Expect = 4e-19 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 7531 CGTGAAGAGGCTCGGTTAAGCACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCA- 7589 |||||||||| || | | || ||| | || ||||| || | ||||| ||| || Sbjct 320232 CGTGAAGAGGAGCGCCTGAAAACATTCGATAAATGGCCAGTTTCCTTTCT--ATCGCCTG 320175 Query 7590 AACTA-TGGCCCGCAACGGGTTTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGT 7648 |||| | || | || || ||||| ||| | ||||| | ||||| ||||||||||| | Sbjct 320174 AACTTCTCGCTAGAAATGGATTTTACTATCTCGGTCGTGGGGACGAAGTGCGTTGCGCCT 320115 Query 7649 TTTGTAAAGTGGAAATCATGCGGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGA 7708 ||||||| ||||| || ||| | |||| |||||| ||||| || | || || |||| Sbjct 320114 TTTGTAAGGTGGAGATAATGAGATGGGACGAAGGCGACGACCCAGCTAAAGATCATCAAC 320055 Query 7709 AGTGGGCACCGCAGTGTCCGTTTCTG 7734 ||||||||||| ||||| |||||| Sbjct 320054 GATGGGCACCGCAATGTCCTTTTCTG 320029 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 7867 CAGAAACCAAAGCAGCTTGCCGAAGCTGGATTATACTACACGGGCCGCGGTGATATGACA 7926 || |||||| | | || || ||||| || || | |||||||| | || |||| || Sbjct 319845 CAAAAACCAGAAGAACTGGCGGAAGCGGGTTTCTTTTACACGGGACAGGGCGATAAAACT 319786 Query 7927 AAGTGTTTCTACTGTGACGGGGGTCTCAAAGATTGGGAGGAAAACGATATACCGTGGGAG 7986 || ||||||| ||| || || || | ||||| ||||| | | || |||| ||||| Sbjct 319785 AAATGTTTCTTCTGCGATGGCGGCTTAAAAGACTGGGAAAATGATGACGTACCTTGGGAA 319726 Query 7987 CAACACGCGCGCTGGTTTGATAAATGCGCATATGTCAAACTAGTCAAAGGGGAGGAATAT 8046 || |||||||| |||||| |||||| ||||| | ||||| ||||| ||||| Sbjct 319725 CAGCACGCGCGTTGGTTTTCGCGATGCGCTTATGTTCAGCTAGTGAAAGGTCGTGAATAC 319666 Query 8047 GTTCAGAAGGT 8057 ||||||||||| Sbjct 319665 GTTCAGAAGGT 319655 >seq286 Length=933739 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || || || || || || |||||||| || ||||| || || | | Sbjct 377617 AGACGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTT 377558 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| |||||||| || || | || || || | |||| ||||| Sbjct 377557 CCATCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCT 377498 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||||||| | | || || |||| || ||||| | ||| Sbjct 377497 TTATCTTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTA 377438 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| ||||| | |||||| ||||||||||||||| Sbjct 377437 ATGGTTTTACCCGTAAGAGTTTTCACAAAAATCTGCATC 377399 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||||||||| || | || | || ||||| ||||| || ||||| Sbjct 781046 TCCTTTTGGATATTGTAATCAGAGAGTGTACGCCCATCTTCCAATTGCTTTCCAGCAAAG 780987 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || ||||||||||| || | || | || ||||| || |||||| |||||| Sbjct 780986 ATAAGTCGCTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTAGCCTTTACATTT 780927 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || || || | ||| || ||||| || ||||| ||||| ||| Sbjct 780926 TCAATGGTATCCGATGGTTCTACTTCTAGCGTTATTGTTTTGCCAGTCAATGTTTTCACA 780867 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 780866 AAGATCTGCAT 780856 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || ||||| || ||| || || ||||||||||| || || Sbjct 378310 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGAATATTGTAGTCTGAG 378251 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| || ||||| || || ||||| ||||| ||||| | ||| Sbjct 378250 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 378191 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| || || | | | || || | ||||||| Sbjct 378190 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTCTCAATTGTGTCAGAGGGCTCCACC 378131 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 378130 TCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACAAAGATTTGCAT 378084 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || || || ||||| || || |||||| || ||||| ||||| ||| Sbjct 781766 CCTCCTCTCAGACGTAATACTAAATGCAGTGTCGACTCTTTCTGGATATTATAATCTGAT 781707 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || ||||| ||||| ||||| || || || ||||| ||||| | || Sbjct 781706 AGAGTACGTCCATCCTCCAATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGG 781647 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| || || || ||| | | | ||||| | || || Sbjct 781646 ATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCAACT 781587 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||||||| || |||||||||||||| Sbjct 781586 TCTAAAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | | ||| |||||||| || || |||||||||||||||||| |||||| Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGAT 782163 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | ||| || || ||||| |||| || || || || | |||| Sbjct 782162 AATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGA 782103 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || ||| || || ||| | | | ||||| | ||||| Sbjct 782102 ATGCCTTCCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACT 782043 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || || ||||| || ||||| ||||| Sbjct 782042 TCTAAAGTGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| || ||||| || || | ||| | || || | ||| ||||| ||||| Sbjct 379186 TCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAG 379127 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || |||||||| || | |||| |||||| ||||| |||||| || || Sbjct 379126 ATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTC 379067 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||||| || || || ||||| ||||| || |||||| Sbjct 379066 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTTACA 379007 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 379006 AATATTTGCAT 378996 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || || | ||| | || || | |||||| || ||||| Sbjct 378046 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 377987 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||| || | ||| | ||| || ||||| ||| || ||| ||| Sbjct 377986 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTC 377927 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||||| || || || ||||| ||||| || || ||| Sbjct 377926 TCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACA 377867 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 377866 AATATTTGCAT 377856 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || || | ||| | || || | |||||| || ||||| Sbjct 378502 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 378443 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||| || | ||| | ||||| ||||| |||||| ||| ||| Sbjct 378442 ATCAGTCTCTGTTGGTCAGGGGGGATACCCTCTTTGTCCTGAATCTTGGCTTTGACATTC 378383 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||||| || || || || || ||||| || || ||| Sbjct 378382 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 378323 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 378322 AATATTTGCAT 378312 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | || ||||| || ||| || || || |||||||| || || Sbjct 379450 CCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 379391 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| || ||||| || || ||||| ||||| || || | || Sbjct 379390 AGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 379331 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| ||||| ||| || || || | | | || || | ||||||| Sbjct 379330 ATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACC 379271 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || ||||| ||||| || || ||||| || ||||| Sbjct 379270 TCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || || | ||| | || || | ||||| || ||||| Sbjct 378958 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGTTGCTTTCCTGCAAAG 378899 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||| || | ||| | ||| || ||||| |||||| || ||| Sbjct 378898 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCTTGGCCTTGACATTC 378839 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||||| || || || || || ||||| || || ||| Sbjct 378838 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACA 378779 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 378778 AATATCTGCAT 378768 >seq2862 Length=892093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGT 9050 ||| || || || || || ||||| || || || || | ||| || |||| | || | Sbjct 104022 TTATTTGGTTCCAGTAGATCCAAAGCCACCATCGCCTCTATTTGTTTCAGA--TAGATTT 103965 Query 9051 --AACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCC 9108 ||| || | ||| | || || | || ||||||||||| ||| || || ||||| Sbjct 103964 GCAACTTCCTCAAGTTTTGGGTAGTAAATCCTTTCACAAATTAGTTGGGCTATTCTGTCA 103905 Query 9109 CCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168 || || || || ||||| ||| ||| || |||||||| | || ||||| ||||| || Sbjct 103904 CCTTTTTTAACAACAAAATCTTGGTCAGAGTGATTGAATAAAACTACTCCTACGTTGCCT 103845 Query 9169 CTGTAATCCTCATCGATCACACCAGC 9194 || || || ||||| || |||||||| Sbjct 103844 CTATAGTCTTCATCTATAACACCAGC 103819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380921424913332