Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3433 286 3e-72 seq286 100 2e-16 seq2618 95.1 1e-14 >seq3433 Length=253125 Score = 286 bits (316), Expect = 3e-72 Identities = 601/891 (67%), Gaps = 5/891 (1%) Strand=Plus/Minus Query 106109 TATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGT 106168 |||||| | || || |||||||| ||||| ||||| || || ||||| | || || | Sbjct 146638 TATAATCGTGTACTCCGGTCCACCCACGGCCATACATAGCGACGCCTACTACAATCTTCT 146579 Query 106169 TGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTC-T 106227 | || | ||| |||| | ||| | || || | | |||||||| |||| | Sbjct 146578 TAGGGTTGACACCTTGAGCTAACAAGTACTGTACACCGAAGTCAGTTGTGTACGTTTCCT 146519 Query 106228 TCGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTGTTCGACCAC 106287 ||||| ||||| ||| ||||||| | || |||| || | | || ||||| Sbjct 146518 TCGGA-TTCCACTCAGGTGCATATAATGAAGTCTGATGTCCTAAAGTATCATTGGACCAG 146460 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || || || || ||||||||||||||||| || | ||||| || ||||| || | || Sbjct 146459 GCACCCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCATGTAGTTTTGGGCAGCTTTG 146400 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 |||| | || ||| ||||| |||| || || ||||| || | |||||| Sbjct 146399 TAGTCGATTACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAGTTCGTATTTC 146340 Query 106408 TTGCCCGTTTGCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACA 106467 ||||||||||| || |||||||| || ||| |||||| ||||| || || | ||| Sbjct 146339 TTGCCCGTTTGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCATCAATATGACG 146280 Query 106468 TATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGGA 106527 || ||||| |||| ||| | | ||| | || || |||||||| || || Sbjct 146279 TAAGTTTCACCGTCT--TTCGGGCT-GCCGAGTTTCTCGTTAGCTCCTTTGCCTCCGGGG 146223 Query 106528 AATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACA 106587 || ||||| || || |||| || ||||| | |||||| | | | || ||||| | Sbjct 146222 AACTCCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAACTCCTTCGCT 146163 Query 106588 GAATTTACAAACACGTTTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATAGC 106647 ||| || || || ||| || | ||||| | || |||| || |||| || Sbjct 146162 GAAGCGACGAAACGGTGTCTCTTAACTGGGTCATCGAAGAAGAAGAAAGGATCTGCGAGG 146103 Query 106648 GTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGCCATC 106707 ||||| || || ||||| || || | || |||| || | || ||| ||||||| Sbjct 146102 GTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTTCAACGCCATC 146043 Query 106708 AACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCTTC 106767 || || || || || || |||||||| || ||||| | || | ||||| || |||||| Sbjct 146042 AATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTTCTGTGGCTTC 145983 Query 106768 TGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCATGAT 106827 || | || ||||||||||| ||||| || || |||| || ||||||| |||||| Sbjct 145982 TGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCCAGAGCATGAG 145923 Query 106828 TTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCACCG 106887 |||||| | || ||||| || ||| || || || || || |||||||| Sbjct 145922 CGTTGCAACGCTTGGAAACTACCTTCGATTTCCTTCAAACTGTCATTGATGCCATCACCA 145863 Query 106888 CCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTATCT 106947 || ||||| || || || || || | | ||| | |||||| || | ||||| ||| Sbjct 145862 CCACAGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGGGACACGATCG 145803 Query 106948 ACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACA 106998 || ||| | || || |||||||||||||||||||| |||||| ||||| Sbjct 145802 ACTGGATACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGCGCCGACA 145752 >seq286 Length=933739 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||||||||| ||||| || || || ||||| || || ||| || || Sbjct 378996 ATGCAAATATTTGTAAAGACATTGACAGGAAAGACCATCACTTTGGAGGTGGAGCCCTCG 379055 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || ||||||||||| | || ||| ||| Sbjct 379056 GACACAATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAA 379115 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| || ||||| | |||||| | || | ||||||||||| Sbjct 379116 CAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAAC 379175 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| || ||||||||||| || Sbjct 379176 ATTCAGAAGGAATCTACTCTCCA 379198 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || ||||| ||||| | ||||||||||||||||| || ||||| Sbjct 377397 AAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAACCG 377456 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | || || |||| || || |||||||| | || || Sbjct 377457 TCTGACACTATCGAAAATGTAAAAGCTAAAATTCAA-GATAAAGAGGGTATTCCTCCCGA 377515 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 || || || ||||| ||||| || || |||||||||||| | || | ||||||| Sbjct 377516 CCAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATTA 377575 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||||||||||| |||||||| || ||| | || || Sbjct 377576 TAACATTCAAAAGGAATCTACCCTTCACTTAGTTTT 377611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || ||||||||||| || ||| || ||||| Sbjct 377627 AATGCAAATTTTTGTCAAGACCCTGACTGGTAAAACCATCACATTGGAAGTAGAGCCTTC 377686 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | | || ||||||| || ||||||||||| | || ||| | Sbjct 377687 TGACACAATTGAAAACGTTAAAGCAAAAATTCAG-GACAAAGAGGGCATTCCTCCAGACC 377745 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| | ||||||||||| || ||||| | |||||| | || | ||||||||| Sbjct 377746 AACAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATA 377805 Query 28732 ACATTCAAAAAGAATCTACTCTGCA 28756 ||||||| || |||||||| || || Sbjct 377806 ACATTCAGAAGGAATCTACCCTCCA 377830 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| || || || ||||| ||| |||||| ||| Sbjct 781768 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATTACTTTAGAAGTGGAACCATCA 781827 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| || || || || | || ||||| Sbjct 781828 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCTCCTGATCAG 781887 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | |||||||| || || || |||||||| ||| | | ||||| | ||||||| Sbjct 781888 CAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGCCGTACACTAT--CAGATTATA 781945 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || || ||||| || || ||||| | |||||| | | ||||||| || Sbjct 781946 ATATCCAGAAAGAGTCGACACTGCATTTAGTATTACGTCTGAGAGGAGGTAT 781997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||||| || || || ||||| || ||| |||||||| Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| ||||| |||||||| || | || ||| || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || |||||||| || |||||| |||||||| | ||| | ||||||| || Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || || ||||| ||||| || Sbjct 379632 ATCCAGAAGGAATCCACTCTCCA 379654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| || || || || || ||| |||||| ||| Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| || || || || | ||| ||| || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAG 782115 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || ||| | || ||||| || ||||| | |||||| || | | ||| | || || | Sbjct 782116 CAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTAT--CTGACTACA 782173 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | ||||||||||| |||||||| || |||| || ||||| | ||||| Sbjct 782174 ATATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATTGAGGGGAGG 782222 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||||| || || || ||||| || || ||| ||||| Sbjct 377856 ATGCAAATATTTGTGAAGACATTGACAGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 377915 Query 28614 GAGACGGTGGCCGATCTC-AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || || |||| |||| || |||||||| || | ||| || || Sbjct 377916 GACACAATTGAGAATGTCAAAGCTAAAATTC-AGGACAAAGAAGGCATCCCCCCTGACCA 377974 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| |||||||| || || || | |||||| | || | | || || || Sbjct 377975 ACAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGTCGCACCCTCTCGGACTACAA 378034 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||| || || ||||||||||| || Sbjct 378035 CATCCAGAAGGAATCTACTCTCCA 378058 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||||| || || || ||||| || || ||| ||||| Sbjct 379224 ATGCAAATATTTGTGAAGACATTGACAGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 379283 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| ||||| ||||||||||| | || ||| || Sbjct 379284 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 379343 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | || ||||| || || |||||| |||||||| | ||| | |||| || || Sbjct 379344 CAGCGTCTGATCTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 379403 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || || ||||| ||||| || Sbjct 379404 ATCCAGAAGGAATCCACTCTCCA 379426 >seq2618 Length=201275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || |||||||| |||||||||| ||||| ||| || ||| || Sbjct 161859 AAAATGCAGATCTTCGTAAAAACCCTAACGGGTAAGACCATCACCCTTGAGGTGGAGGCT 161800 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || | ||| |||||| ||||| || ||| | || ||| Sbjct 161799 TCCGACACTATCGAAAATGTGAAGGCTAAAATCCAAGACAAGGAAGGAATTCCTCCAGAC 161740 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | | ||||| || || ||||||||||| ||| ||| | |||| || Sbjct 161739 CAACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGCCGTACTCTTTCCGACTAC 161680 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| || || ||||| ||||| ||| |||| | || | || ||||| Sbjct 161679 AACATCCAGAAGGAATCCACTCTTCACCTGGTTCTCAGGCTTCGTGGAGG 161630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425386736780436