Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq209 233 1e-56 >seq209 Length=133430 Score = 233 bits (258), Expect = 1e-56 Identities = 285/389 (73%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 25916 TTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTC 25975 |||| ||||| | | ||||||||||||||| ||||| | |||||||| || ||||| Sbjct 13811 TTTTTTTCAACCCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTT 13752 Query 25976 GCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAG 26035 || | | ||||||||| || ||| ||||| ||||||||||| ||||||||||||| Sbjct 13751 GCACGGACTTCTTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCA 13692 Query 26036 TGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACG 26095 ||||||||||| || || |||||||| ||| ||| || || ||||||||||| Sbjct 13691 TGCCATGGTTCCAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACA 13632 Query 26096 TATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTT 26155 ||||| || || | || | ||| | |||||||| || |||||| | |||| ||| ||| Sbjct 13631 TATCTAGCTGTGTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTT 13572 Query 26156 GTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCA 26215 || | | || | ||| ||| | | || ||| || |||| | ||| || |||||| Sbjct 13571 GTTCCAGCTATGTAGGACCCTTTAGCCCTTATACAATGTACATGTAGACCTATACCACCA 13512 Query 26216 GCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCA 26275 || |||||||||| |||||| | | || ||||| | ||||||| || || || Sbjct 13511 GCTGATTTTGAAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCG 13452 Query 26276 CCTTTCATTCCTAATAAAAAACAAGAAGA 26304 ||||||| ||| ||| ||||||||||| Sbjct 13451 TCTTTCATAGCTATTAAGAAACAAGAAGA 13423 Score = 107 bits (118), Expect = 1e-18 Identities = 307/466 (66%), Gaps = 12/466 (3%) Strand=Plus/Minus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 |||||||| || | | ||| |||||||| ||||||| | | | |||||| | ||||| Sbjct 15008 GCTGGTTTTGTGCGTAAATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAG 14949 Query 24746 TGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCT 24805 || |||||||||| ||| || || | | | | | | ||| | ||||| | Sbjct 14948 TGTATTGATGTTAACTTTCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTT 14889 Query 24806 TGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCG 24865 ||| || || ||||| ||||| | | ||| | || || | ||||| || Sbjct 14888 TGGTCAATGAATGCACCCCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCC 14829 Query 24866 TAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGAT 24925 || |||| || || ||| | || || | || || | | |||||||||| || Sbjct 14828 CAAACTGTCTTATACAAATCTCTGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAA 14769 Query 24926 CCATTTTC---TCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTC 24981 ||||| | | | | ||||| | |||| | ||| | || | || | || Sbjct 14768 CCATTGTTGTGTATTATAAGATT---TTTCATGTCTTCATCCCATAAATCTGCTTGTGTC 14712 Query 24982 AAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTAT 25041 || ||| |||| |||||| | ||| | | |||||||||||| || || | |||| Sbjct 14711 AA-ATCCCTAAGCAAGTGGTGATTGACCACTTGAAATTCTCCAGATAATACACGTCTT-- 14655 Query 25042 TGATAA--GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTA 25099 |||||| ||||||||| ||||||||||| |||||||||| || | ||||| | |||| Sbjct 14654 TGATAAATGTTTGAAGTAAATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTA 14595 Query 25100 GATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCAT 25145 ||||| || ||||| ||||| || || || || | | ||||| Sbjct 14594 GATGCCGTGGGCATGGGTGCTAGTAGTAATGAGTTACGAAGACCAT 14549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253029255605300