Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq286 154 2e-32 seq1176 113 7e-20 seq995 84.2 3e-11 >seq286 Length=933739 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| ||||| || ||||| || |||||||| ||| || Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| |||||| |||||||| |||||||| || ||||| || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAG 782115 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || ||||| |||||| | || ||||| || || ||| Sbjct 782116 CAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTATCTGACTACAAT 782175 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| || || ||||| || || ||| Sbjct 782176 ATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATTGAGGGGAGGT 782223 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| ||||| || |||||||| |||||||| ||| || Sbjct 781768 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATTACTTTAGAAGTGGAACCATCA 781827 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| |||||| |||||||| ||||| || ||||| || || Sbjct 781828 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCTCCTGATCAG 781887 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||||| ||||| | || ||| | | || |||||||||||||| Sbjct 781888 CAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGCCGTACACTATCAGATTATAAT 781947 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| |||| || |||||||| ||| | | ||||| ||| Sbjct 781948 ATCCAGAAAGAGTCGACACTGCATTTAGTATTACGTCTGAGAGGAGGT 781995 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || |||||||| ||||| || ||||| ||||| ||| ||| Sbjct 781312 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 781371 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| ||||| |||||| |||||||| ||||| || |||||||| || Sbjct 781372 GACACCATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCAGACCAG 781431 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| || |||||||| || |||||| | ||| | || ||||||||| Sbjct 781432 CAGAGACTTATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACTCTTTCTGATTATAAT 781491 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | ||||| || | | || ||||| ||| Sbjct 781492 ATCCAGAAAGAATCTACATTGCATTTGGTCCTGCGTTTGAGAGGTGGT 781539 Score = 131 bits (144), Expect = 2e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || || ||||| || || || ||||| ||||| ||| || Sbjct 781084 ATGCAGATCTTTGTTAAGACTTTAACTGGCAAGACAATCACATTGGAAGTTGAACCATCA 781143 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| ||||| |||||| |||||||| ||||| || |||||||| || Sbjct 781144 GACACTATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCAGACCAG 781203 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| ||||| ||||| |||||| | ||| | || ||||||| Sbjct 781204 CAGAGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGCACTCTTTCTGATTATA-- 781261 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || | || | |||||||| | | || ||||| ||| Sbjct 781262 ATATCCAAAAGGAATCTACATTACATTTAGTACTGCGTTTGAGAGGTGGT 781311 Score = 123 bits (136), Expect = 4e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 155816 TAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA 155875 || ||| ||||| || ||| | ||||| | || || ||||| ||||||||||| || || Sbjct 377393 TATTAAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGA 377452 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCC 155935 | ||||| | ||| ||| || ||| |||||| ||||||||||| || || ||||| Sbjct 377453 ACCGTCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAGGGTATTCCTCC 377512 Query 155936 AGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGA 155995 || || ||||| | |||| |||||| ||||| | |||||| || || | || || Sbjct 377513 CGACCAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGA 377572 Query 155996 TTATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 |||||| || || ||| || | || ||||| ||||| || Sbjct 377573 TTATAACAT-TCAAAAGGAATCTACCCTTCACTTAGTTTT 377611 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || || || |||||||| ||| || Sbjct 781540 ATGCAGATTTTTGTCAAGACTTTGACTGGCAAGACAATCACTTTAGAAGTTGAACCATCA 781599 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| |||||| ||||| || ||||| || ||||| || || Sbjct 781600 GACACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATCCCTCCTGATCAG 781659 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||||| ||||| | || ||| | ||| |||||||||||||| Sbjct 781660 CAGCGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGACGTACTCTATCAGATTATAAT 781719 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| |||| || |||||||| ||| | | ||||| ||| Sbjct 781720 ATCCAGAAAGAGTCGACACTGCATTTAGTATTACGTCTGAGAGGAGGT 781767 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || || || || ||||||||| ||| Sbjct 379452 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCG 379511 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| || || |||||||| || |||||||| || Sbjct 379512 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAG 379571 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | ||| ||||| || || |||||| | ||| | || ||||| ||| Sbjct 379572 CAGCGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAAT 379631 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || | || || |||||||| Sbjct 379632 ATCCAGAAGGAATCCACTCTCCATTTAGT 379660 Score = 105 bits (116), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||||||||| ||||| || || ||||||| ||| || Sbjct 780855 AATGCAGATCTTTGTGAAAACATTGACTGGCAAAACAATAACGCTAGAAGTAGAACCATC 780914 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || || ||| || |||||||| ||||| || ||||| || || Sbjct 780915 GGATACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCA 780974 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | || | ||| || ||||| | |||||| | || | || ||||| | Sbjct 780975 ACAGCGACTTATCTTTGCTGGAAAGCAATTGGAAGATGGGCGTACACTCTCTGATTACA- 781033 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || | || | |||||||| | | || ||||| ||| Sbjct 781034 -ATATCCAAAAGGAATCTACATTGCATTTAGTACTGCGTTTGAGAGGTGGT 781083 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| ||||| || || || | || || || ||| Sbjct 377856 ATGCAAATATTTGTGAAGACATTGACAGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 377915 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| |||||| || || ||||||||||| || || || ||| Sbjct 377916 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGACCAA 377975 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||| || |||||||| |||||| Sbjct 377976 CAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGAT 378011 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || || || || || || || || Sbjct 379680 ATGCAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAGGTGGAGCCCTCG 379739 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| || || ||||||||||| || || || ||| Sbjct 379740 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGACCAA 379799 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||| |||| | ||| || |||||||| |||||| Sbjct 379800 CAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGAT 379835 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| || || || || || || ||||| ||| ||| Sbjct 378540 ATGCAAATATTTGTAAAGACATTGACAGGGAAGACCATCACTTTGGAAGTTGAACCTTCG 378599 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| |||||||| || |||||||| || Sbjct 378600 GACACAATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 378659 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||||| || ||||| || || |||||| | ||| | || || || ||| Sbjct 378660 CAGCGTCTGATTTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCGGACTACAAT 378719 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || | || || |||||||| Sbjct 378720 ATCCAGAAGGAATCCACTCTCCATTTAGT 378748 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| ||||| || || || | || || || ||| Sbjct 379224 ATGCAAATATTTGTGAAGACATTGACAGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 379283 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| || || ||||| ||||| |||||||| || Sbjct 379284 GACACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 379343 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | || ||||| || || |||||| | ||| | || || || ||| Sbjct 379344 CAGCGTCTGATCTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGACTACAAT 379403 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || | || || |||||||| Sbjct 379404 ATCCAGAAGGAATCCACTCTCCATTTAGT 379432 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || |||||||| ||||| || || || || || || || || Sbjct 378996 ATGCAAATATTTGTAAAGACATTGACAGGAAAGACCATCACTTTGGAGGTGGAGCCCTCG 379055 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || || || ||||| ||||| |||||||| ||| Sbjct 379056 GACACAATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAA 379115 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||| ||||| ||||| |||||| | || | || |||||||| Sbjct 379116 CAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAAC 379175 Query 156003 AT 156004 || Sbjct 379176 AT 379177 >seq1176 Length=404280 Score = 113 bits (124), Expect = 7e-20 Identities = 138/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 155854 AAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATAC 155913 |||| || || |||||||| ||| || || | ||| || ||||| |||||| | Sbjct 385007 AAAC-ATCACTTTAGAAGTGGAACCATCAGACACCATTGAGAATGTGAAGGCTAAAATTC 385065 Query 155914 AAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCG 155973 ||||||| |||||||| || | ||| || ||||||||||||| ||| || || ||||| | Sbjct 385066 AAGATAAGGAAGGCATTCCCCTAGACCAGCAAAGATTGATTTTTGCAGGAAAACAGCTAG 385125 Query 155974 AAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGT 156033 ||||| | || ||||| || || ||||| |||||| | || |||||||| || | Sbjct 385126 AAGATGGTCGCACATTATCTGACTACAATATTCAAAAAGAGTCTACTCTTCATTTGGTCT 385185 Query 156034 TAAGATT 156040 | ||||| Sbjct 385186 TGAGATT 385192 >seq995 Length=359585 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||| || |||||||| ||||||||||| ||||| || |||||||| || || | ||||| Sbjct 120654 GTACTCGCCGACTTTCTTCTCGAAGAAGTTTGTTTTCCCTTCCAAGGAGATGAGGTTCAT 120713 Query 17929 AAAATCAAATGGATTAGTGGTTTTATAAT 17957 || ||||||||||| |||| || |||| Sbjct 120714 GAAGTCAAATGGATTCTTGGTGTTGTAAT 120742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731840126974400