Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq265 167 7e-36 seq209 147 6e-30 seq2554 131 5e-25 seq1199 107 6e-18 >seq265 Length=634605 Score = 167 bits (184), Expect = 7e-36 Identities = 233/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||| ||||||||||||||||||| ||||| || | | ||| || | || | ||| Sbjct 71575 CTCTTTCTACCAACAGCATCAATTTCATCAATAAATAGGATACATGGGGCATGCTTTCTG 71516 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||| ||| | |||| || | |||| |||| ||||||| ||||||||| ||| Sbjct 71515 GCCATTGAAAACATATCTCGGACTCTAGATGGGCCAACACCAACAAACATTTCTAAGAAT 71456 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||||| | |||||| |||||||| |||||| ||||| || ||| ||| | || || Sbjct 71455 TCAGAACCAGATACTGTAATGAATGGTACATTGGCTTCTCCAGCTGTAGCCTTTGCTAGC 71396 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC- 289259 || || ||||| || |||||||| || | ||| | || ||||||| ||| ||||| Sbjct 71395 AGAGTTTTACCAGTACCAGGTGGGCCAGTCAGTAGTGCACCTTTTGGTATTTTAGCCCCC 71336 Query 289260 -AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 || || |||||| | || |||||| || | ||||| ||| || |||| | Sbjct 71335 AAGTCGA--TATATTGTTGTGGATTCTTTAGGAAATTTACAAACTCCATAATTTCAATCT 71278 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 | || || ||||| || || ||||| Sbjct 71277 TAGCTTCTTCACAACCAGCCACATC 71253 >seq209 Length=133430 Score = 147 bits (162), Expect = 6e-30 Identities = 616/962 (64%), Gaps = 13/962 (1%) Strand=Plus/Minus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458 ||| |||||||||| ||| ||||||||||| || | || | |||||| ||| | Sbjct 14313 AAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTATGGGCCTATGCCTAAGATT-TGAGT 14255 Query 155459 GCTTGTCTTCTTG-TTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCA 155517 || ||||| | ||||||||| || |||||||| || || || | |||| | Sbjct 14254 TTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCAATTATTTTGTTAAGATTTTGTGTTA 14195 Query 155518 ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACA 155577 || ||||| || ||| ||| || || | | || |||||||| ||||| ||||||| Sbjct 14194 TTATTTTGGTCACTTCTTTTAACTTTTCAAAATTGAAAGTTTTATCTTCATTAACAAACA 14135 Query 155578 TACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCT 155636 | || | || || |||| |||||| || ||| || | || | | |||| ||| Sbjct 14134 TGTTTAGTGCTATTGAAGCCAAATTACAGACTGCAACTTCATCTGATGATG-TGTACTCT 14076 Query 155637 ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTA 155696 ||||| ||| || || || | || || ||||| | ||| || || || ||| Sbjct 14075 ACAATTTCAGTACAGAGATTGCTGCATTTTATTGTGCCAAGATTTTTTTGATTGCTTTTT 14016 Query 155697 CTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGA 155756 || || || | ||||| |||| ||||| || ||||| ||||||| || || || | | Sbjct 14015 CTATTGCAGGAGTCCTTATATAACATGTACGGTGTTCCAGTCTCCACTTGAGCTTCTACA 13956 Query 155757 AT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCAT 155814 || |||| ||| | | || || | |||||| | | ||| |||| Sbjct 13955 ATTGCTTT--CCATAACATCTGCGCTTTTACTTGCTTAACAAACTTTTTTTCTTGTTCAT 13898 Query 155815 ATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTAT 155874 |||| ||| ||| || | || || || ||||||| || |||||||| | || Sbjct 13897 ATTTTTCATATAGCTTTTCAAACTCTTCTCCCCAACAATCTGAAAGGCCAGGGCAATCAT 13838 Query 155875 CGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCG 155934 ||| || | | |||| ||| || || | | |||||||| ||| Sbjct 13837 GGGGACACATAATACTCCAATTTTCGTTTTTTTCAACCCTTTTCATAAATAAATCTGGTA 13778 Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG-ATTCTTCCGT 155993 ||||| |||||| || | || |||| | |||| || | || || ||| || Sbjct 13777 TCCAAAGAGCATAAAACAACTCTCTTG-CACGGACTTCTTCTTTCCCTGTATTTTTTTTG 13719 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 || ||||||||||| |||||| | ||| ||| |||| || |||||||| |||| Sbjct 13718 AGATCTAAGAATTCAAAAATATCTGCATGCCATGGTTCCAAGTAAATAGCAAATGCACCA 13659 Query 156054 ---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 || | ||||| || ||||||||||| | ||| || || || | || | || ||| Sbjct 13658 GGTCTCTTATTGCCGCCTTGATCTACATATCTAGCTGTGTTGTTATATACTCTTAACATT 13599 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 || | | ||||| ||| ||||| ||||| || | || || | | | | Sbjct 13598 GGTACCAATCCATTAGAAACTCCATTTGTTCCAGCTATGTAGGACCCTTTAGCCCTTATA 13539 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 ||| | |||||| || |||||||| | |||| ||||| || |||| || | | Sbjct 13538 CAATGTACATGTAGACCTATACCACCAGCTGATTTTGAAATCATTGCACATTGTTTAAGA 13479 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAAT 156290 |||| | || ||||||||| || |||| ||| | || || | || ||| | Sbjct 13478 GTATCATATATTCCTTCAATACTGTCGTCTTTCATAGCTATTAAGAAACAAGAAGAAAGC 13419 Query 156291 TGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTA 156350 || || | || || |||| ||| ||||| || ||||||| |||| || || | | Sbjct 13418 TGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTGGACTTGCATGTGTAAAGTATTTTTCA 13359 Query 156351 GA 156352 || Sbjct 13358 GA 13357 >seq2554 Length=721471 Score = 131 bits (144), Expect = 5e-25 Identities = 430/656 (66%), Gaps = 27/656 (4%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | |||||| ||| || ||||||| ||||| | ||||||| | || ||| Sbjct 375320 GCAATCAAACCACAGAAATTGCAAACATGGATTCTGTATGGATCAGATACTTCGAATAAA 375379 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | | ||| | | ||||||||| | ||| ||||||||| ||||| |||||| Sbjct 375380 CGCTCTCTTAAGAATTGTGCTGCACCGTGAGCAATTTGACAATCACGTTCCATCTCACCG 375439 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||| ||||| ||||| | ||||||||| || ||| || || | | | || Sbjct 375440 AAACGCAGACCTCCATCTCTAGCCCTACCTTCCATAGGTTGTCGCACTAAAATCTGCACT 375499 Query 251584 GGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | ||| ||| || ||||| | ||||||||| ||||||||||| ||| Sbjct 375500 GGACC--TCTAGC-TCTAGAGTGAATTTTATCGTCTACCATATGTTTGAGACGCTGATAG 375556 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCAT-----TTGCTCTCCAGTTAGAGCGTTAT 251695 ||| ||||| | |||| || || |||| || || |||||| || | |||| Sbjct 375557 TATGTAGGACCCAGAAAGA--CTTGA--GCATTAATCTTTCT-TCCAGTGTGACCATTAT 375611 Query 251696 ACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATAT--- 251752 |||| |||||||| ||| | | ||||||| | || | ||| | ||| | Sbjct 375612 ACATTACTTCGTTACCACGAAGATGATAACCATACTCTTGCAATAGTGATGAAATTTTTT 375671 Query 251753 -CACCAATCTTGAATTTGCTAAAACTGGTG--CCGTCTCCGTAAAGACCCATTTGAATCA 251809 ||| || | | | | ||| ||||| | || ||| ||| | | | | Sbjct 375672 GCAC--ATTTACAGCATCATTAAA-TGGTGTTGCATCACCGATTTCGCCCTTGTTAGACG 375728 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | ||||| ||| || ||| ||| || | || ||||||||| ||||| || | Sbjct 375729 AAACTTTACCTTGAATACACTCAATCAAGTGACCAATTGTCATACGAGATGGAATGGCGT 375788 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | ||||| ||||| ||||| || | | || ||| ||| || ||||||| ||| | | Sbjct 375789 GCGGATTAATGATAATGTCAGGAGTTAAACCTTCACAAGTAAAAGGCATAT-CTTCTTGT 375847 Query 251930 CAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATA 251988 | ||| || ||||| || || ||||||||||| |||||| || ||||| ||||| Sbjct 375848 CTATACTGAATTCCACATGTACCTTTTTGTCCGTGCCGAGAAGCAAATTTATCGCCAATT 375907 Query 251989 ACAGGACGGCGAACACTACGAAGGCGAACCTTACAGAAGTTGTAACCATCACCGTT 252044 |||| |||||| || | | | || ||||| || ||||| || | ||| Sbjct 375908 TGAGGAATACGAACAGATCGCACCCTTATTTTGCAGAATTTATAACCCTCGCTGTT 375963 Score = 91.5 bits (100), Expect = 4e-13 Identities = 191/277 (69%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 |||| ||| || |||||||||||||| ||||||||||||||| ||||| | ||||| Sbjct 375387 TTAAGAATTGTGCTGCACCGTGAGCAATTTGACAATCACGTTCCATCTCACCGAAACGCA 375446 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCC 233377 |||| ||||| | | |||||| | | | ||| || | | ||| | | | |||||| Sbjct 375447 GACCTCCATCTCTAGCCCTACCTTCCATAGGTTGTCGCACTAAAATCTGCAC-TGGACCT 375505 Query 233378 TGAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGA 233437 ||| | | | | ||||||||| | |||||||| || || | | ||| || ||| Sbjct 375506 CTAGCTCTAGAGTGAATTTTATCGTCTACCATATGTTTGAGACGCTGATAGTATGTAGGA 375565 Query 233438 CCAATAAATAGTTCTGCGTGTAATTGTTC-CCCAGATTCACCGCTGTATAAAACTTCATT 233496 || | ||| | || || | |||| ||| |||| | ||| | || | ||||| || Sbjct 375566 CCCAGAAAGACTTGAGCAT-TAATCTTTCTTCCAGTGTGACCATTATACATTACTTCGTT 375624 Query 233497 ACC-CGATGAATTGTAACCAATATCTTTTAATAGAGA 233532 ||| ||| | || |||||| |||| ||||| || Sbjct 375625 ACCACGAAG-ATGATAACCATACTCTTGCAATAGTGA 375660 >seq1199 Length=1939063 Score = 107 bits (118), Expect = 6e-18 Identities = 202/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||||| |||||| ||| || | ||| ||||| ||||||||||| Sbjct 195596 ATCATAATGAACCATAACAGACTCCATAGCCTTTATAAGACGTCGCTGGATATAACCAGT 195655 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | |||||||||||| |||||||| ||||| |||||||||||||||| ||||| | Sbjct 195656 TTCGGCTGTTTTTACAGCAGTATCAATGAGACCTTCACGACCACCCATAGCGTGGAAATA 195715 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | |||| ||| || || ||| | | || | || |||||||| | | || || Sbjct 195716 GAACTCTGATGGTGTCAGGCCGGCAAGATAAGAATTTTCTACGAAACCTCTGGATTCAGG 195775 Query 302733 --CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGAT 302789 || ||||||| || | || || || || || || || | || | || || Sbjct 195776 ACCGTAATCGTC---TTTTATGAAATGCGGAAGTGTTCTTTTACGGAAACCAAACGGAAT 195832 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | || || |||||||| || || |||| || | ||| | ||| || ||||| Sbjct 195833 TCTTTTACCTTCAACGTTTTGTTGCCCCACACAAGCAATAACCTGAGAGATATT 195886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471751899902108