Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3433 196 4e-45 seq762 194 1e-44 seq2763 100 2e-16 seq170 96.9 3e-15 seq286 91.5 1e-13 seq2177 87.8 1e-12 >seq3433 Length=253125 Score = 196 bits (216), Expect = 4e-45 Identities = 575/880 (65%), Gaps = 7/880 (1%) Strand=Plus/Plus Query 28803 GTCGCTGCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTG 28862 |||| ||||| ||||| |||||| |||||||| || || | | | || || || Sbjct 145753 GTCGGCGCGTACTTTGTCGAATGGGGCGTGTACCCGCGAAAGTATCCAGTCGATCGTGTC 145812 Query 28863 CCGCTGCCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGG 28922 || | || || | | |||||| |||| |||||| | || || || || || || || Sbjct 145813 CCCATTCCTAATTTAACTCATCTGCTATATGGCTTCATCCCGATCTGTGGTGGTGATGGC 145872 Query 28923 CTCAACGACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAAC 28982 |||| ||| | || || |||||||| ||||| ||||||| || ||| Sbjct 145873 ATCAATGACAGTTTGAAGGAAATCGAAGGTAGTTTCCAAGCGTTGCAACGCTCATGCTCT 145932 Query 28983 GGCCGTTCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAA 29042 || || ||| |||| || | ||||| ||||| |||||||| | || || || || Sbjct 145933 GGGCGCGAAGACTTTACGGTGTCGATTCATGATCCCTGGGCCGCTTTGCAGAAGCCACAG 145992 Query 29043 AAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCC 29102 || || | ||| | ||||| || || ||||||||||||||||| || | ||||| Sbjct 145993 AAAGGACTCTCTTCCTGGAATGAACCTTACAAAGGCAATTTCGGCCAATTGATGGCGTTG 146052 Query 29103 AAGTTGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGAC 29162 || |||| || | | || ||||| || || || || |||||||| | | || Sbjct 146053 AAACAAGCCAGGCCTGATTTGAAGATTCTCCCATCTATTGGTGGCTGGACCCTCGCAGAT 146112 Query 29163 CCTTTTTATTTTATGCACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAA 29222 ||||| | || | | ||| | | || | | | || || | || | |||| Sbjct 146113 CCTTTCTTCTTCTTCGATGACCCAGTTAAGAGACACCGTTTCGTCGCTTCAGCGAAGGAG 146172 Query 29223 TTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGT 29282 || | | |||||| | |||||||| | ||||| |||||||| || || || || Sbjct 146173 TTCCTTCTAACCTGGAAAATGTTTGACGGTCTCGACATCGACTGGGAGTTCCCCGGAGGC 146232 Query 29283 AAAGGCGCTAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTA 29342 ||||| |||||| || ||| |||| | | | |||| || || || ||| || Sbjct 146233 AAAGGAGCTAACGAGAAACTCGGCAGCCCGAAA---GACGGTGAAACTTACGTCATATTG 146289 Query 29343 CTGAAGGAATTGCGCGCAATGCTGGATAAACTGCAATTGCAAACGGGTAAAACGTATGAA 29402 |||| || |||||| |||| | | || | | |||||||| || | || ||| Sbjct 146290 ATGAAAGAGCTGCGCGAAATGTTAAACGAATTATCTCTTCAAACGGGCAAGAAATACGAA 146349 Query 29403 TTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTG 29462 | ||| || ||||| | ||| ||||| ||| ||| | | ||| | | || Sbjct 146350 CTCACATCAGCTATCAGTGCCGGCTGGGACAAGATTCAAGTAATCGACTACAAAGCTGCC 146409 Query 29463 CAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAAC 29522 ||||| | | || | ||||| || ||||||||||| || || || || ||||| || Sbjct 146410 CAAAACTACATGGACCACATATTCCTCATGAGTTACGACTTCAAGGGTGCCTGGTCCAAT 146469 Query 29523 ACCGATTTGGGATATCAAACTACACTCTACGCACC-GAGTTGGAATCCCAACGAGCTTTA 29581 ||| ||| |||| ||| || | || ||||| ||| |||||||| || || || Sbjct 146470 GATACTTTAGGACATCAGACTTCATTATATGCACCTGAG-TGGAATCCGAAGGAAACGTA 146528 Query 29582 CAACACTGACCACGCCGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATTA 29640 || |||||| || ||| ||| || || | ||||| || |||| || ||| Sbjct 146529 CACAACTGACTTCGGTGTACAGT-ACTTGTTAGCTCAAGGTGTCAACCCTAAGAAGATTG 146587 Query 29641 TTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGT 29680 | || |||||||| ||||| ||||| || ||||| || || Sbjct 146588 TAGTAGGCGTCGCTATGTATGGCCGTGGGTGGACCGGAGT 146627 >seq762 Length=98817 Score = 194 bits (214), Expect = 1e-44 Identities = 134/152 (88%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || || || ||||||||||| | |||||||||||||||||||| |||||||||||| Sbjct 64220 GCGGGTCGGCCCAGCGCCTTGGCCACCTCGGGCATGTTGACGATGACCGTCTTGATGCCG 64279 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 64280 TTGCCCTTGCCCTCGACCTTGGCGCAGATCCGCGGCATCTTGTAGCGGTAGAACGCGTCC 64339 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 || ||||| ||||| ||||| || | |||||| Sbjct 64340 GCGACATTCCGGTTCACGTTGACGGACCCCAT 64371 Score = 143 bits (158), Expect = 2e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| || |||||||||||||||||||| || ||| | ||| |||||| Sbjct 63459 GCGGGCGGGTTCTTGAGTATGAAGGTGTTGAGCTTGTGGTTGAACTCGAGCTGGCCGTGG 63518 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| |||| |||| || | ||||||||| || || Sbjct 63519 TAGCCGCACGCCTTGCAGCCCTGCGAGATGGTGTTGCGCTTGGTGGACACGATCAGGTCC 63578 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||||||||| || || || |||| ||| |||||||||||||| Sbjct 63579 GTCTCCGGGTTGTCGCACTCGGGGCACAGCACGAACTTGCGGATGAA 63625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 8/152 (5%) Strand=Plus/Plus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTC---CGCC 33483 || |||||||||||||||||||| | ||||||||||||||| | ||| || || Sbjct 60266 TCGTCGGCCTGCTGCAGCCAGTCGATGAAGGGCTGCGCGCGCTTCACCACCTCGCTGACC 60325 Query 33484 ATCTCCTCGCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTT 33542 | ||||| | | | ||| ||||| ||||||||| |||||| | ||||| || Sbjct 60326 ACCTCCTTG-GAC---GCGTACTTGCGCGACGGCTTGGCCGCCCACTCTATGATCGTCTT 60381 Query 33543 CTTTTCCACCACGTTCAAGTCGTACAGCAGCT 33574 || ||||| | || || |||||||||||||| Sbjct 60382 CTCCTCCACTATGTCCAGGTCGTACAGCAGCT 60413 >seq2763 Length=379199 Score = 100 bits (110), Expect = 2e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 103669 AGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCGCGCGGTTTGAAGCAACATCCCGA 103728 ||| || || || | || |||||| ||| ||||| || || || ||| | || || Sbjct 319894 AGAGGCGGCTCGCCTACGGACTTTTGCCGATTGGCCCCGAAGTATGCGTCAAAAACCAGA 319835 Query 103729 GATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGCTTTTA 103788 ||| || ||||| |||||||||||||| || | |||| ||| ||||| || | Sbjct 319834 AGAACTGGCGGAAGCGGGTTTCTTTTACACGGGACAGGGCGATAAAACTAAATGTTTCTT 319775 Query 103789 CTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACACGCGCT 103848 |||| | ||||| | || | ||||| | ||||||| || ||| |||| ||||||| Sbjct 319774 CTGCGATGGCGGCTTAAAAGACTGGGAAAATGATGACGTACCTTGGGAACAGCACGCGCG 319715 Query 103849 TTGGTTCGGACGCTGCGCATACGTGCTACTTGTCAAAGGCCACGATTATGTACAAAAGGT 103908 |||||| || ||||| || || | || || ||||| | || || || || ||||| Sbjct 319714 TTGGTTTTCGCGATGCGCTTATGTTCAGCTAGTGAAAGGTCGTGAATACGTTCAGAAGGT 319655 >seq170 Length=994537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 107176 GCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGA 107235 ||| || |||||||||||||| || ||||||| || |||||||| |||||||| || Sbjct 674290 GCATGGTTTCCACGTGCACGAGTTCGGCGACAACACGAACGGCTGCACGTCCGCGGGCCC 674231 Query 107236 ACACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGG 107295 |||||||| ||||| | || | ||||| || ||| |||| | |||||||| || Sbjct 674230 GCACTTCAACCCCACGAAGCAGGAGCACGGCGCCCCCAGCGCCAGCGTGAGGCACGTGGG 674171 Query 107296 CGATCTGGGCAACGTC 107311 ||| || |||||| || Sbjct 674170 CGACCTCGGCAACATC 674155 >seq286 Length=933739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 110256 TTTATAAGAGAT-TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACC 110314 ||| | | |||| |||| ||||| || ||||| |||||| | || || ||||||||||| Sbjct 377382 TTTGTTACAGATATTAAGATGCAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACA 377441 Query 110315 GTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAA 110374 | || || || || ||| ||| | |||||| || ||| || ||||| Sbjct 377442 TTAGAGGTTGAACCGTCTGACACTATCGAAAATGTAAAAGCTAAAATTCAAGATAAAGAG 377501 Query 110375 GGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGA 110434 || | || || || ||||| ||||||| ||| || || || |||| |||| || Sbjct 377502 GGTATTCCTCCCGACCAGCAAAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGG 377561 Query 110435 ACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGA 110494 || | | ||||| ||||||||||| |||||||| | ||| | || || | || || Sbjct 377562 ACCCTCTCCGATTATAACATTCAAAAGGAATCTACCCTTCACTTAGTTTTGCGTCTTCGT 377621 Query 110495 GGGGGAA 110501 || |||| Sbjct 377622 GGTGGAA 377628 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || || || || || ||||| || | || ||||||| Sbjct 377856 ATGCAAATATTTGTGAAGACATTGACAGGAAAGACCATCACTCTGGAGGTGGAGCCTTCG 377915 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| |||||||||||| | ||| || ||| Sbjct 377916 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGACCAA 377975 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| || |||| | || | |||| |||||| Sbjct 377976 CAGAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGTCGCACCCTCTCGGACTACAAC 378035 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || |||||||| Sbjct 378036 ATCCAGAAGGAATCTAC 378052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| ||||| ||||| || || || | ||| ||| || Sbjct 781996 ATGCAAATTTTCGTCAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCA 782055 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || ||| || || |||||| | ||| || || Sbjct 782056 GACACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAG 782115 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || |||||||| || |||| | ||| | | || ||||| Sbjct 782116 CAAAGATTGATTTTTGCAGGAAAACAGCTAGAAGATGGTCGCACATTATCTGACTACAAT 782175 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 ||||||||||| ||||| | || |||| || ||| | |||||| Sbjct 782176 ATTCAAAAAGAGTCTACTCTTCATTTGGTCTTGAGATT--GAGGGG 782219 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || | || || |||||||| || | ||| |||||| Sbjct 377627 AATGCAAATTTTTGTCAAGACCCTGACTGGTAAAACCATCACATTGGAAGTAGAGCCTTC 377686 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| || ||| |||||||| ||| | || || || Sbjct 377687 TGACACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAAGAGGGCATTCCTCCAGACCA 377746 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | ||||| | ||| ||||||||||| || |||| | || | | ||||| || Sbjct 377747 ACAGCGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAA 377806 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || |||||||| Sbjct 377807 CATTCAGAAGGAATCTAC 377824 >seq2177 Length=268633 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 94119 GCTTCTTCTGGCCCATGCGGTGGATGCGGTCCTGCGCCTGCAGCTCGATCTGCGGGTTCC 94178 |||| |||| |||| ||||| ||||||||||||||||||| ||| | ||||||||||| Sbjct 252058 GCTTGGTCTGCCCCACGCGGTAGATGCGGTCCTGCGCCTGCTCCTCCAGCTGCGGGTTCC 252117 Query 94179 AATGCGGCTCCAACATAATTATGTGATTGCCGCCGGTTAAATTTAATCCCACGCCGCC 94236 | ||||| |||| || | | ||| || ||||| | || || |||||||| || Sbjct 252118 AGTGCGGGTCCAGCAGTAGCAGGTGGTTAGCGCCGCAGAGGTTCAAACCCACGCCCCC 252175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412824070229612