Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2618 125 5e-24 seq286 107 1e-18 seq3433 105 4e-18 seq1698 82.4 5e-11 >seq2618 Length=201275 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | | ||| || |||||||||| ||| |||||||| ||||| ||||| || Sbjct 161630 CCTCCACGAAGCCTGAGAACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAA 161689 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| |||| ||| || || |||||||||| || || |||||| | || Sbjct 161690 AGAGTACGGCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGGTCTGGAGGA 161749 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | ||||| || || | | || | || ||||| || Sbjct 161750 ATTCCTTCCTTGTCTTGGATTTTAGCCTTCACATTTTCGATAGTGTCGGAAGCCTCCACC 161809 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 161810 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTTACGAAGATCTGCAT 161856 >seq286 Length=933739 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||||||||||| || || ||| |||| |||| Sbjct 377839 AGGACTAGATGGAGGGTAGATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCT 377780 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || ||||| || || || |||||| | || | ||||| ||||| Sbjct 377779 TCAAGCTGTTTACCAGCAAAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCC 377720 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||| ||| ||| | | || | ||| | ||| || || | || ||||| Sbjct 377719 TGAATTTTTGCTTTAACGTTTTCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGTT 377660 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| ||||| || ||||| Sbjct 377659 TTACCAGTCAGGGTCTTGACAAAAATTTGCAT 377628 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || ||||| || || |||| |||| |||||||| || || |||||| Sbjct 378274 TCCTTCTGAATATTGTAGTCTGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAG 378215 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||| ||| | || | || || ||||| | || || |||||| Sbjct 378214 ATCAGACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGACGTTC 378155 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| || ||| || || | || ||||||||||| || | ||||| ||| Sbjct 378154 TCAATTGTGTCAGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTCACA 378095 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 378094 AAGATTTGCAT 378084 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||| ||||| |||||||| ||| |||| |||| Sbjct 378979 AGGACTAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCT 378920 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || |||||||||| || ||||| | || | || || ||||| Sbjct 378919 TCAAGTTGCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCC 378860 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | || || ||| || || | || |||| Sbjct 378859 TGAATCTTGGCCTTGAC--ATTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGG 378802 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||||| ||||| |||||||| Sbjct 378801 TCTTCCCTGTCAATGTCTTCACAAATATCTGCAT 378768 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || ||||| || || |||| |||| |||||||| || || |||||| Sbjct 379414 TCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAG 379355 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||||||| | || | ||||| ||||| | ||||| |||||| Sbjct 379354 ATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTC 379295 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||| || || | || ||||||||||| || | ||||| ||| Sbjct 379294 TCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACA 379235 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 379234 AATATTTGCAT 379224 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| |||||||| ||| |||| |||| || || |||||||| || ||| Sbjct 378046 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCATCTTCAAGCTGCTTTCCTGCAAAG 377987 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||||| || ||||| | || | || || ||||| | ||||| |||||| || Sbjct 377986 ATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATTTTAGCTTTGAC--AT 377929 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || | ||| || || | || ||||||||||| || | ||||| | Sbjct 377928 TCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCA 377869 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 377868 CAAATATTTGCAT 377856 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||||||||| || || ||| |||| |||| || || || || || || ||| Sbjct 379186 TCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAG 379127 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || || |||||| | || | ||||| ||||| | || || |||||| Sbjct 379126 ATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTC 379067 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || ||| || || | || ||||||||||| || | ||||||||| Sbjct 379066 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTTACA 379007 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 379006 AATATTTGCAT 378996 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||||| ||| ||||| ||||||||||| || || ||| | | |||| |||| ||| Sbjct 377603 GTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCATCTTCCAATTG 377544 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||||||||| || || || | ||||||||| | || | ||||| || || | ||||| Sbjct 377543 CTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTATCTTGAATTTT 377484 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||| || | | || | ||| | || || || | || ||||| || ||||| Sbjct 377483 AGCTTTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATGGTTTTACCCGT 377424 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| |||||||| Sbjct 377423 AAGAGTTTTCACAAAAATCTGCAT 377400 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 || || ||||| | |||||||| || |||| | | || ||||| || ||||| || || Sbjct 781538 CCACCTCTCAAACGCAGGACCAAATGCAATGTAGAT-TCTTTCTGGATATTATAATCAGA 781480 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || |||| |||| || |||||||| || ||||| || |||| ||||||||| | || Sbjct 781479 AAGAGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGAGG 781420 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || ||||| || | ||||| || || | | || | ||| | || || Sbjct 781419 GATTCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTGTCAGATGGTTCCAC 781360 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || ||||| || || || | ||||| |||||||||||||| Sbjct 781359 TTCCAATGTGATGGTTTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 781312 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| |||| ||||| |||| || ||| || ||||| || ||||| ||| Sbjct 782222 CCTCCCCTCAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGAT 782163 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | |||| |||| || || || ||||| || || |||| || |||||||||| | || Sbjct 782162 AATGTGCGACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGA 782103 Query 34871 ACCCCCTCCTTGTCGTTTATTTT 34893 | || ||||| || | ||||| Sbjct 782102 ATGCCTTCCTTATCTTGAATTTT 782080 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || || |||||||| || |||| |||| |||||||| || || ||||| Sbjct 378730 TCCTTCTGGATATTGTAGTCCGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAA 378671 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| || ||||||||| | || | || || ||||| | || || ||||| || Sbjct 378670 ATCAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCCTTGAC--AT 378613 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || | || || || | || |||||||| || || | ||||||| Sbjct 378612 TCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTTA 378553 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 378552 CAAATATTTGCAT 378540 >seq3433 Length=253125 Score = 105 bits (116), Expect = 4e-18 Identities = 573/900 (64%), Gaps = 27/900 (3%) Strand=Plus/Minus Query 5641 TCGTGCACTCCGGACCACCCACGACCGTACATGGCTACTCCCACAATTAGCTTCCTCGAC 5700 ||||| ||||||| ||||||||| || ||||| || || || || | | |||| | | Sbjct 146633 TCGTGTACTCCGGTCCACCCACGGCCATACATAGCGACGCCTACTACAATCTTCTTAGGG 146574 Query 5701 TCGACGCTCTGATTTAGCAGACGCCTG-ACGGAAAAATCGGTCGTGTACGTTTCGCCTGG 5759 | ||| | ||| || || | ||| || || || || ||||||||||| || Sbjct 146573 TTGACACCTTGAGCTAACA-AGTACTGTACACCGAAGTCAGTTGTGTACGTTTCCTTCGG 146515 Query 5760 GTTCCACGATGGAGCGAACAGAGGTGTCTGGTGTCCCAGATCCGTCAACG-ACCAGGCAC 5818 |||||| || || | | | ||||| ||||| | | ||| | ||||||||| Sbjct 146514 ATTCCACTCAGGTGCATATAATGAAGTCTGATGTCCTAAAGTA-TCATTGGACCAGGCAC 146456 Query 5819 CCTTGTAATCGTACGTCATGACAAATATGTGATCAAGGTATTTTTGTGCGGTGGCGTAGT 5878 ||||| | ||||| |||||| |||||||| || | ||| ||||| || | ||||| Sbjct 146455 CCTTGAAGTCGTAACTCATGAGGAATATGTGGTCCATGTAGTTTTGGGCAGCTTTGTAGT 146396 Query 5879 CGACGACGTCGATCTTGTCGTGTCCCGCGCCGACGGCGCTCGTCAACT-GTAGCCGTCTA 5937 ||| || | |||||||| || || | || || || | | ||| ||| Sbjct 146395 CGATTACTTGAATCTTGTCCCAGCCGGCACTGATAGCTGATGTGAGTTCGTA--TTTCTT 146338 Query 5938 CCCCGCTTCTCG-CCCAACTCATCAAGCATCACGCGAAGTTCCCGCAGCAAAAGAGTGTA 5996 |||| || | || || | | ||| |||| || || || ||| | ||| Sbjct 146337 GCCCGTTTGAAGAGATAATTCGTTTAACATTTCGCGCAGCTCTTTCATCAATATGACGTA 146278 Query 5997 GGTGTTGCGATCCACCTCGGCATTACCCAACACAGAATTGGCACCCTTTCCACCCGGAAA 6056 || | | || |||| | || | || || || || || || || || Sbjct 146277 AGTTTCACCGTC--TTTCGG-GCTGCCGAGTTTCTCGTTAGCTCCTTTGCCTCCGGGGAA 146221 Query 6057 CTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAGGTCTCCAGAAAC----TCGCGGA 6112 ||||||||||||||| | |||||||| | |||||||| || ||| |||| || Sbjct 146220 CTCCCAGTCGATGTCGAGACCGTCAAACATTTTCCAGGTTAGAAGGAACTCCTTCGCTGA 146161 Query 6113 CGCTTGTGACGAACACCTCACGCTTA---GAGTCATCGTTCATGAAATAAAACGGATCGC 6169 || |||||| | | |||| | ||||||| | ||| | || ||||| Sbjct 146160 AGC----GACGAAACGGTGTCTCTTAACTGGGTCATCG---AAGAAGAAGAAAGGATCTG 146108 Query 6170 TCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAACGAGGGGTTGTGACGTTTGATGG 6229 | ||||| || || || ||||| || | | |||| || || |||| | | Sbjct 146107 CGAGGGTCCAGCCACCAATAGATGGGAGAATCTTCAAATCAGGCCTGGCTTGTTTCAACG 146048 Query 6230 CCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGTACGCCTCAACACCTTTCTGTG 6289 |||||| ||||| || || || ||||| ||| || | | | |||||||||| Sbjct 146047 CCATCAATTGGCCGAAATTGCCTTTGTAAGGTTCATTCCAGGAAGAGAGTCCTTTCTGTG 145988 Query 6290 GTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCTTGAAGTCATCGCGACCAGCGC 6349 | || ||||| ||||||||| || ||||| ||| | ||||| ||||| |||| || Sbjct 145987 GCTTCTGCAAAGCGGCCCAGGGATCATGAATCGACACCGTAAAGTCTTCGCGCCCAGAGC 145928 Query 6350 AGGATTTCTGTAGCGCCT-CAAAGGAATTGGGAATCTGCTTGAGGGCGTCGTTTATGCCG 6408 | || || | ||| | ||| | | | || | ||| | ||| || ||||| Sbjct 145927 ATGAGCGTTGCAACGCTTGGAAACTACCTTCG-ATTTCCTTCAAACTGTCATTGATGCCA 145869 Query 6409 CTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGTACC 6468 ||||||||| || || ||||| || || ||||| || || | |||||| || || || Sbjct 145868 TCACCACCACAGATCGGGATGAAGCCATATAGCAGATGAGTTAAATTAGGAATGGGGACA 145809 Query 6469 TTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGACGACT 6528 || | ||| ||| || ||||| ||||| || || || ||||| ||||| ||| Sbjct 145808 CGATCGACTGGATACTTTCGCGGGTACACGCCCCATTCGACAAAGTACGCGCCGACAACT 145749 >seq1698 Length=195807 Score = 82.4 bits (90), Expect = 5e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || ||||| |||||||| | |||| ||||||||| ||||| ||||| || Sbjct 124185 CCACCACGCAGCCTCAACACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 124244 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCA 34850 ||| | | |||| ||||| ||||| ||||||||||||| Sbjct 124245 AGGGTTCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCA 124284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325678970676596