Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq170 132 5e-26 seq209 127 2e-24 seq286 104 2e-17 seq2618 89.7 5e-13 >seq170 Length=994537 Score = 132 bits (146), Expect = 5e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGA 116531 ||| || ||||||||||||||||| ||||||| || ||||||||||| ||||| ||| Sbjct 674290 GCATGGTTTCCACGTGCACGAGTTCGGCGACAACACGAACGGCTGCACGTCCGCGGGCCC 674231 Query 116532 ACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGG 116591 |||||||||||||| ||||| |||||||| |||| |||| ||| | ||||| || Sbjct 674230 GCACTTCAACCCCACGAAGCAGGAGCACGGCGCCCCCAGCGCCAGCGTGAGGCACGTGGG 674171 Query 116592 TGACCTGGGCAACATTGAGGC 116612 ||||| |||||||| ||||| Sbjct 674170 CGACCTCGGCAACATCGAGGC 674150 >seq209 Length=133430 Score = 127 bits (140), Expect = 2e-24 Identities = 481/747 (64%), Gaps = 17/747 (2%) Strand=Plus/Minus Query 148257 TGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAAC 148316 ||||| ||||| ||||| || || | | || || | |||| | ||| ||||| Sbjct 14693 TGATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGATAAATGTTTGAAGTAAAT 14634 Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 |||||||| || || || || || | ||| || || || | ||||||||||||| ||| Sbjct 14633 GGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTGCT 14574 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT---ATTTTGCGCTTCAGAGCCGCCCAG 148433 | || | ||||| || | ||| ||| ||| ||||| ||| ||| | | |||| Sbjct 14573 AGTAGTAATGAGTTACGAAGACC---ATTCTTTGCAATTTTTTCCTTAAGAACAGACCAG 14517 Query 148434 TCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCG 148493 ||||| | || ||||| | |||||| || || || | ||| || | || || Sbjct 14516 TCCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCT 14457 Query 148494 GGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG 148553 || || || || || | ||| || ||| | | | || ||||| | ||| || || Sbjct 14456 GGACTTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 148554 AGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT 148613 | ||||| ||||| || || || ||||| ||| | | || ||| ||| Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATATTTGTTGGTTCAACTTGATAGCTTTCTCACTT 14337 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 || || || ||||||| ||||| | |||||| || || || || || | || ||| Sbjct 14336 TCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTATG 14277 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGAT 148732 |||| || ||| || ||| || ||| || | || || |||| || || Sbjct 14276 GGCCTATGCCTAAGATTTGAGTTTTTAGCT-TCTGGAACTGGGTAAAAGTTGACATCAAT 14218 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAA-TTCTGCGCAGCAATTCAAAATCGT 148791 || |||| |||||| | | | || || | |||| | | |||||||| | Sbjct 14217 TATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAA-CTTTTCAAAATTGA 14159 Query 148792 ACTTGTCATCTACGATG-----CATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGC 148846 | | | |||| | | ||| ||| | || || || || | ||| || || || Sbjct 14158 AAGTTTTATCTTCATTAACAAACAT--GTTTAGTGCTATTGAAGCCAAATTACAGACTGC 14101 Query 148847 CGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCAC 148906 ||||| | | |||||||||| || || | || |||||||||||||| || Sbjct 14100 AACTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGT 14041 Query 148907 GCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCC 148966 ||| | || ||||||||||| || || ||||| | |||||| || | |||||||||| Sbjct 14040 GCCAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGT 13981 Query 148967 GCCAGTTTCCACCTGCGTTTCCACTAT 148993 ||||| ||||| || | ||| || || Sbjct 13980 TCCAGTCTCCACTTGAGCTTCTACAAT 13954 >seq286 Length=933739 Score = 104 bits (114), Expect = 2e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || ||||| |||||||| ||| | ||| ||| | || || || Sbjct 379429 AAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTGCGACCA-TCTTCCAG 379371 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | || || ||||||||||| ||||||||||| || ||||| ||| Sbjct 379370 TTGTTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTC-CTGAA 379312 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | ||||| ||||| | |||||||| || | |||| ||| || | Sbjct 379311 TTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTC 379252 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || || ||||| Sbjct 379251 CTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | || ||||||||||| ||||| ||||| || | | ||| ||||| | Sbjct 781745 AAATGCAGTGTCGACTCTTTCTGGATATTATAATCTG--ATAGAGTACGTCCATCCTCCA 781688 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| || ||| | || || |||||||| || |||||||| ||||||||||| || Sbjct 781687 ATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTGTCTTGGA 781628 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || ||| | | ||||| ||||| | || || || || | |||| || |||| Sbjct 781627 TTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCAACTTCTAAAGTGATTGTCTTGC 781568 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||| || || ||||||||||| Sbjct 781567 CAGTCAAAGTCTTGACAAAAATCTGCAT 781540 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || ||||| |||||||| || | ||| ||| | || || || Sbjct 378745 AAATGGAGAGTGGATTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGACCA-TCTTCCAG 378687 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| || ||||||||||| ||||| || ||||| ||||| || Sbjct 378686 TTGTTTACCAGCGAAAATCAGACGCTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAAT 378627 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| ||||| | || || || || | |||| ||| || || Sbjct 378626 CTTGGCCTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTGATGGTCTTCCC 378567 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| || || ||||| Sbjct 378566 TGTCAATGTCTTTACAAATATTTGCAT 378540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || ||||| |||||||||||| | ||| ||| | || || || Sbjct 379657 AAATGGAGAGTGGATTCCTTCTGGATATTGTAATCGGAGAGAGTGCGACCA-TCTTCCAG 379599 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 379598 TTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTC-CTGAA 379540 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | ||||| ||||| | || || || || | |||| ||| || | Sbjct 379539 TTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTTCC 379480 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || || ||||| Sbjct 379479 CTGTCAATGTCTTCACAAATATTTGCAT 379452 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGA 133512 ||||| | || ||||||||||| ||||| |||| | || ||| ||| ||||| | Sbjct 781973 AAATGCAGTGTCGACTCTTTCTGGATATTATAAT--CTGATAGTGTACGGCCATCCTCCA 781916 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| || ||| | || || |||||||| || |||||||| |||||||| || || Sbjct 781915 ATTGCTTTCCGGCGAAGATAAGACGCTGCTGATCAGGAGGGATACCTTCCTTATCTTGGA 781856 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || ||| | | ||||| || || | || ||||| || | || | || |||| Sbjct 781855 TTTTAGCCTTCACATTCTCAATGGTATCTGATGGTTCCACTTCTAAAGTAATAGTCTTGC 781796 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || | ||||| |||||||| ||||| Sbjct 781795 CAGTTAATGTTTTGACGAAAATTTGCAT 781768 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| || | ||| ||| | || || || | Sbjct 378971 ATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCA-TCTTCAAGTT 378913 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || | ||| ||||| || ||||||||||| ||||| |||| Sbjct 378912 GCTTTCCTGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTCCTGAATCT 378853 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| | ||||||||| || | |||| ||| || || | Sbjct 378852 TGGCCTTGACATTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTG 378793 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 378792 TCAATGTCTTCACAAATATCTGCAT 378768 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| || | ||| ||| | || || |||||||| || Sbjct 379876 GTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCA-TCTTCAAGCTGCTTTCC 379818 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | || || | ||| ||||| || ||||||||||| ||||| ||| ||| | || Sbjct 379817 TGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTC-CTGAATTTTAGCCT 379759 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||||||| || | |||| ||| || || |||| | Sbjct 379758 TGACGTTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTCCCTGTCAATG 379699 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 379698 TCTTCACAAATATTTGCAT 379680 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || |||||||| || |||||||| || | ||| ||| | || || || Sbjct 782201 AAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAATGTGCGACCA-TCTTCTAG 782143 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || |||| | | |||||||| || || ||||||||||| || ||| Sbjct 782142 CTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTATC-TTGAA 782084 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | ||||| ||||| | || ||||| || | |||| || |||| Sbjct 782083 TTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACTTCTAAAGTGATAGTCTTGC 782024 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || | ||||| |||||||| ||||| Sbjct 782023 CAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| || | ||| ||| | || || |||||||| || Sbjct 378052 GTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGACCA-TCTTCAAGCTGCTTTCC 377994 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || || | ||| ||||| || ||||||||||| ||||| ||| ||| || | Sbjct 377993 TGCAAAGATCAGTCTCTGTTGGTCAGGGGGGATGCCTTCTTTGTC-CTGAATTTTAGCTT 377935 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | |||||||| || | |||| ||| || || |||| | Sbjct 377934 TGACATTCTCAATTGTGTCCGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATG 377875 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 377874 TCTTCACAAATATTTGCAT 377856 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || |||| || ||||| ||||| || ||||| || | ||| ||| | || || || Sbjct 380113 AAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCA-TCTTCTAG 380055 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || | || || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 380054 TTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTC-CTGAA 379996 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||||| | ||||| ||||| | || || || || | |||| ||| || | Sbjct 379995 TTTTAGCCTTGACGTTCTCAATTGTGTCCGAAGGTTCGACTTCCAAAGTGATGGTCTTCC 379936 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || || || || ||||| Sbjct 379935 CTGTCAATGTCTTCACAAAGATTTGCAT 379908 >seq2618 Length=201275 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| | || | | | ||||| | || || || Sbjct 161660 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCA-TCCTCCAATTGTTTACC 161718 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||| ||||| ||||| || ||||||||||| ||| || ||| Sbjct 161719 AGCGAAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTAGCCTT 161778 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | |||||| || | ||||| ||| || || || || || Sbjct 161779 CACATTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTACCCGTTAGGGT 161838 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||||||| |||||||| Sbjct 161839 TTTTACGAAGATCTGCAT 161856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483399747024160