Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq209 257 4e-63 seq1199 95.1 3e-14 >seq209 Length=133430 Score = 257 bits (284), Expect = 4e-63 Identities = 439/628 (70%), Gaps = 9/628 (1%) Strand=Plus/Plus Query 110518 CTTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTT 110576 ||||||| |||||| ||| || || || || ||||||||| || |||||| ||||| Sbjct 13424 CTTCTTG-TTTCTTAATAGCTATGAAAGACGACAGTATTGAAGGAATATATGATACTCTT 13482 Query 110577 AAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATT 110636 ||| || ||| | ||||| ||| |||| || || ||| | || || ||| ||| Sbjct 13483 AAACAATGTGCAATGATTTCAAAATCAGCTGGTGGTATAGGTCTACATGTACATTGTATA 13542 Query 110637 CGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATG 110696 | | ||||| | | || || | | || || | ||| | |||| | || |||||| Sbjct 13543 AGGGCTAAAGGGTCCTACATAGCTGGAACAAATGGAGTTTCTAATGGATTGGTACCAATG 13602 Query 110697 TTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGC 110753 |||||||| | ||| |||| || | |||||| ||||||| || ||||||| ||| Sbjct 13603 TTAAGAGTATATAACAACACAGCTAGATATGTAGATCAAGGCGGCAATAAGAGACCTGGT 13662 Query 110754 TCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGT 110813 |||||||||| || | ||||| |||||| ||||||| |||||||||||||| || Sbjct 13663 GCATTTGCTATTTACTTGGAACCATGGCATGCAGATATTTTTGAATTCTTAGATCTCAAA 13722 Query 110814 AAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCA 110873 |||||| ||| |||||| | ||| | || || |||||||| | ||||| || Sbjct 13723 AAAAATACAGGGAAAGAAGAAGTCCGTGCAAGAGAGTTGTTTTATGCTCTTTGGATACCA 13782 Query 110874 GATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGT 110933 |||||||| |||||| | ||| || |||| | | ||| | |||||||||| ||| | Sbjct 13783 GATTTATTTATGAAAAGGGTTGAAAAAAACGAAAATTGGAGTATTATGTGTCCCCATGAT 13842 Query 110934 TCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAA 110993 | ||||| || || ||| | ||| ||||||||||| | || || |||||||||||| Sbjct 13843 TGCCCTGGCCTTTCAGATTGTTGGGGAGAAGAGTTTGAAAAGCTATATGAAAAATATGAA 13902 Query 110994 AAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT-TGGTTCAAAATCCTTGA 111052 ||||| |||||| || ||| | ||| | ||| || ||| ||| | || Sbjct 13903 CAAGAAAAAAAGTTTGTTAAGCAAGTAAAAGCGC-AGATGTTATGGAAAGCAATTGTAGA 13961 Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGCAAAT 111111 | | ||||| || |||||||| || || || || ||||| || || | ||| | ||| Sbjct 13962 AGCTCAAGTGGAGACTGGAACACCGTACATGTTATATAAGGACTCCT-GCAATAGAAAAA 14020 Query 111112 CTAATCAAATGAATTTAGGAACAATTAA 111139 ||||||| ||| | || ||||| || Sbjct 14021 GCAATCAAAAAAATCTTGGCACAATAAA 14048 >seq1199 Length=1939063 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| |||||| | ||| | || | ||| | ||| | ||||| ||||| ||| | Sbjct 197236 CAAAAATCTGGAAAGCCTCTCAAAGCTATCAAAGCTCGCTTGAAAGGCAAAGAAGGTAGA 197177 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 || |||| ||||| |||||||| || ||||||||| || |||| ||||||||||||| Sbjct 197176 ATAAGAGGAAATCTCATGGGAAAGCGAGTTGATTTTTCAGCTAGAACTGTAATCACACCT 197117 Query 305066 GATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123 ||| |||||| || || || || | || || |||| ||| ||| ||| ||| Sbjct 197116 GAT--CCAAATTTGCGTATTGATCAAGTCGGCGTACCAAGATCAATAGCTCAAAACTTAA 197059 Query 305124 CATTTCCAGAGAAAGTTA 305141 |||| || ||| ||||| Sbjct 197058 CATTCCCTGAGTTAGTTA 197041 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||||| || | |||| |||| | |||||| | || || | || ||||||||| Sbjct 196882 AGACATTTGAGAGATGACGATTTGGTTATATTCAATCGACAGCCTACTCTACATAAAATG 196823 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| | ||| || || || | | | ||||| || | ||| | ||| Sbjct 196822 AGTATGATGGGTCACAGAGTTAAGGTTTTGCCATGGTCTACATTCCGTATGAATTTGAGT 196763 Query 305426 -GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | || || ||||| ||||| ||||| |||||||||||| | |||||||| || Sbjct 196762 TGCACAT-CTCCATACAATGCTGATTTCGATGGTGATGAAATGAATCTTCATGTACCACA 196704 Query 305485 ATC 305487 || Sbjct 196703 GTC 196701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186759822160124