Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq286 145 2e-29 seq2618 105 2e-17 seq1176 91.5 3e-13 >seq286 Length=933739 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| || || || || || ||| |||||| Sbjct 377403 CAGATTTTTGTGAAAACTCTTACGGGTAAAACCATTACATTAGAGGTTGAACCGTCTGAC 377462 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| ||||| || ||| |||||||| ||||| || ||| || ||| || Sbjct 377463 ACTATCGAAAATGTAAAAGCTAAA-ATTCAAGATAAAGAGGGTATTCCTCCCGACCAGCA 377521 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| ||||| || ||||||||||| ||||||||||||||||| | ||||||| ||| | Sbjct 377522 AAGGCTTATTTTTGCCGGAAAGCAATTGGAAGATGGAAGGACCCTCTCCGATTATAACAT 377581 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| |||||| | |||||| | ||||| Sbjct 377582 TCAAAAGGAATCTACCCTTCACTTAGTTTTGCGTCTTCG 377620 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| ||||| |||||||||||| |||||| Sbjct 781315 CAGATCTTTGTTAAGACTTTGACTGGCAAAACCATCACATTGGAAGTGGAACCATCTGAC 781374 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || || ||||| || |||||||| || ||| || Sbjct 781375 ACCATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCAGACCAGCAG 781434 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| ||||| || ||||| | ||||||||| | ||| | | ||||| || || Sbjct 781435 AGACTTATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACTCTTTCTGATTATAATATC 781494 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| ||||| Sbjct 781495 CAGAAAGAATCTAC 781508 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | ||||| || || ||||||||||| ||||| || ||| Sbjct 379683 CAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAGGTGGAGCCCTCGGAC 379742 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| || ||||| || |||||||| || || ||| || Sbjct 379743 ACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGACCAACAG 379802 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || ||||||||| | |||||||| | || | | || |||||| || Sbjct 379803 AGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGTCGCACCCTCTCGGACTACAACATC 379862 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || |||||||| || ||||| Sbjct 379863 CAGAAGGAATCTACTCTCCATCTTGT 379888 Score = 104 bits (114), Expect = 6e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || || || |||||||| ||||||||| || ||||| | || Sbjct 782010 CAAAACATTAACTGGCAAGACTATCACTTTAGAAGTGGAACCATCAGACACCATTGAGAA 782069 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| || ||||| ||| || ||| |||||| | || || Sbjct 782070 TGTGAAGGCTAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAGCAAAGATTGATTTT 782129 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| ||| | |||||||| | || || | || ||||| | || |||||||| Sbjct 782130 TGCAGGAAAACAGCTAGAAGATGGTCGCACATTATCTGACTACAATATTCAAAAAGAGTC 782189 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || |||||| Sbjct 782190 TACTCTTCATTTGGTCTTGAGA 782211 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || | ||||| || || ||||||||||| ||||| || ||| Sbjct 378771 CAGATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAGGTGGAGCCCTCGGAC 378830 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||| || |||||||| || || ||| || Sbjct 378831 ACAATTGAGAATGTCAAGGCCAAGATTCAGGACAAAGAAGGCATCCCCCCTGACCAACAG 378890 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || |||||||| | |||||||| | || | | || |||||| || Sbjct 378891 AGACTGATCTTTGCAGGAAAGCAACTTGAAGATGGTCGCACCCTCTCGGACTACAACATC 378950 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||| || || || || Sbjct 378951 CAGAAGGAATCTACCCTCCATCTAGT 378976 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | ||||| || || ||||||||||| ||||| || ||| Sbjct 378315 CAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAGGTGGAGCCCTCGGAC 378374 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| |||||||| || ||||| || || || ||| || Sbjct 378375 ACAATTGAGAATGTCAAAGC-CAAGATTCAGGACAAAGAGGGTATCCCCCCTGACCAACA 378433 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||||| ||||| || ||||||||| | |||||||| | || | | || |||||| | Sbjct 378434 GAGACTGATCTTTGCAGGAAAGCAGCTTGAAGATGGTCGCACCCTCTCGGACTACAACAT 378493 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| || ||||| || || ||||| Sbjct 378494 CCAGAAGGAATCTACACTCCATCTTGT 378520 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | ||||| || || |||||||||||||| ||| ||| ||| Sbjct 378543 CAAATATTTGTAAAGACATTGACAGGGAAGACCATCACTTTGGAAGTTGAACCTTCGGAC 378602 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||||| |||||||| ||| || ||| || Sbjct 378603 ACAATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAG 378662 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || || || |||||||||| | ||| | | || ||||| || Sbjct 378663 CGTCTGATTTTCGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCGGACTACAATATC 378722 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || ||||| || Sbjct 378723 CAGAAGGAATCCACTCTCCA 378742 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | |||||||| || ||||||||||| ||||| || ||| Sbjct 378999 CAAATATTTGTAAAGACATTGACAGGAAAGACCATCACTTTGGAGGTGGAGCCCTCGGAC 379058 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||| || ||||| || ||| || ||| || Sbjct 379059 ACAATTGAGAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAACAG 379118 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || || ||| | |||||||| | || | ||||||| ||| | Sbjct 379119 CGTCTTATCTTTGCTGGTAAACAGCTTGAAGATGGTCGCACCCTCTCCGATTATAACATT 379178 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || |||||||| || || || Sbjct 379179 CAGAAGGAATCTACTCTCCATCTAGT 379204 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | ||||| || || |||||||||||||| ||| ||| ||| Sbjct 379455 CAAATATTTGTGAAGACATTGACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCGGAC 379514 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| || ||||| || |||||||| || || ||| || Sbjct 379515 ACAATTGAGAACGTCAAGGCTAAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAGCAG 379574 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || || || |||||||||| | ||| | |||||||||| || Sbjct 379575 CGTCTGATCTTTGCTGGTAAACAACTGGAAGATGGTCGCACTCTCTCCGATTACAATATC 379634 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || ||||| || Sbjct 379635 CAGAAGGAATCCACTCTCCA 379654 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||||| ||||| ||| || ||| Sbjct 781543 CAGATTTTTGTCAAGACTTTGACTGGCAAGACAATCACTTTAGAAGTTGAACCATCAGAC 781602 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||| || || || || Sbjct 781603 ACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATCCCTCCTGATCAGCAG 781662 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||||||||| ||||| |||||| | ||| | | ||||| || || Sbjct 781663 CGTCTTATCTTCGCCGGAAAGCAATTGGAGGATGGACGTACTCTATCAGATTATAATATC 781722 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| || || || Sbjct 781723 CAGAAAGAGTCGACACTGCA 781742 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 |||||||| || ||||||||||| ||||| ||||||||| | || || ||| Sbjct 378108 ACAGGAAAGACCATCACTTTGGAGGTGGAGCCCTCTGACACAATTGAGAACGTCAAGGCC 378167 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| |||||||| ||| || || || | || |||||||| || || Sbjct 378168 AAGATTCAAGACAAAGAAGGTATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGTAAA 378227 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||| | ||| | | || ||||| | ||||| || || ||||| || Sbjct 378228 CAACTGGAAGATGGTCGCACTCTCTCAGACTACAATATTCAGAAGGAATCCACTCTCCA 378286 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || |||||||||||||| ||| ||| |||||| | || || ||| Sbjct 379932 ACAGGGAAGACCATCACTTTGGAAGTCGAACCTTCGGACACAATTGAGAACGTCAAGGCT 379991 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || ||||| || |||||||| || || ||| || | || ||||| || || || Sbjct 379992 AAAATTCAGGACAAAGAAGGTATCCCTCCAGACCAGCAGCGTCTGATCTTTGCTGGTAAA 380051 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | |||||||| | ||| | | || |||||| ||||||| ||||||||| | ||| Sbjct 380052 CAACTAGAAGATGGTCGCACTCTTTCAGACTACAACATCCAGAAGGAGTCTACTTTACAC 380111 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| || || | ||||| ||| || || Sbjct 780859 CAGATCTTTGTGAAAACATTGACTGGCAAAACAATAACGCTAGAAGTAGAACCATCGGAT 780918 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||||||||| || ||||| || || ||| || Sbjct 780919 ACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAACAG 780978 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||| || |||||||| ||||||||||| | || | | |||||||| || Sbjct 780979 CGACTTATCTTTGCTGGAAAGCAATTGGAAGATGGGCGTACACTCTCTGATTACAATATC 781038 Query 206353 CAGAAAGAGTCTAC 206366 || || || ||||| Sbjct 781039 CAAAAGGAATCTAC 781052 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | |||||| | |||||| ||||| || || || | ||||| || | | ||| Sbjct 377620 CGAAGACGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTC 377561 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||| ||||||||||| || ||||||| ||| || Sbjct 377560 CTTCCATCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTG 377517 >seq2618 Length=201275 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || ||||| ||| ||||| ||||| Sbjct 161841 AAAACCCTAACGGGTAAGACCATCACCCTTGAGGTGGAGGCTTCCGACACTATCGAAAAT 161782 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||||||| || ||| || | | |||||| Sbjct 161781 GTGAAGGCTAAAATCCAAGACAAGGAAGGAATTCCTCCAGACCAACAGCGTTTGATCTTC 161722 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||| ||||| | ||| | |||| |||||| ||||||| || || Sbjct 161721 GCTGGTAAACAATTGGAGGATGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAATCC 161662 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| ||| | || ||||| Sbjct 161661 ACTCTTCACCTGGTTCTCAGGCTTCG 161636 >seq1176 Length=404280 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 206201 AAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTC 206260 |||| |||||||| ||||||||| || ||||| | || || ||| || |||| Sbjct 385007 AAAC-ATCACTTTAGAAGTGGAACCATCAGACACCATTGAGAATGTGAAGGCTAAAATTC 385065 Query 206261 AAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGG 206320 |||| || ||||| ||| | ||| |||||| | || || || ||||| ||| | | Sbjct 385066 AAGATAAGGAAGGCATTCCCCTAGACCAGCAAAGATTGATTTTTGCAGGAAAACAGCTAG 385125 Query 206321 AAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTT 206380 ||||||| | || || | || ||||| | || ||||||||||||||||| | || | Sbjct 385126 AAGATGGTCGCACATTATCTGACTACAATATTCAAAAAGAGTCTACTCTTCATTTGGTCT 385185 Query 206381 TGAGA 206385 ||||| Sbjct 385186 TGAGA 385190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181768044996764