Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3433 215 5e-51 seq209 152 5e-32 seq170 123 2e-23 seq286 120 3e-22 seq2618 93.3 4e-14 >seq3433 Length=253125 Score = 215 bits (238), Expect = 5e-51 Identities = 346/497 (70%), Gaps = 0/497 (0%) Strand=Plus/Plus Query 24817 AAAATTGTAGCGGCTTACTTCGTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGAC 24876 ||| |||| | || ||||| ||||| ||||||||||| | ||| ||| | | ||||| Sbjct 145747 AAAGTTGTCGGCGCGTACTTTGTCGAATGGGGCGTGTACCCGCGAAAGTATCCAGTCGAT 145806 Query 24877 AAAGTGCCCGCGCCCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGC 24936 || ||| || ||||| | || ||||||| | ||| | ||||| || || || Sbjct 145807 CGTGTCCCCATTCCTAATTTAACTCATCTGCTATATGGCTTCATCCCGATCTGTGGTGGT 145866 Query 24937 GAGGGCATAAACGACGCTCTCAAAACAGTTCCCGGTAGTTTTGAGGCGCTGCAGCGCTCG 24996 || ||||| || ||| | | || | | |||||||| | ||| |||| ||||| Sbjct 145867 GATGGCATCAATGACAGTTTGAAGGAAATCGAAGGTAGTTTCCAAGCGTTGCAACGCTCA 145926 Query 24997 TGCGCCGGGCGCGACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAA 25056 ||| | |||||||| || |||| ||| | ||||| || ||||||||||| | ||||| Sbjct 145927 TGCTCTGGGCGCGAAGACTTTACGGTGTCGATTCATGATCCCTGGGCCGCTTTGCAGAAG 145986 Query 25057 CCGCAGAAAGGCGTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATG 25116 || |||||||| |||| | ||||| || || ||||||||||| || || ||||| ||| Sbjct 145987 CCACAGAAAGGACTCTCTTCCTGGAATGAACCTTACAAAGGCAATTTCGGCCAATTGATG 146046 Query 25117 GGCCTGAAATTAGCTAATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTG 25176 | ||||| ||| | || | |||||| | || | || || || ||||||||| | Sbjct 146047 GCGTTGAAACAAGCCAGGCCTGATTTGAAGATTCTCCCATCTATTGGTGGCTGGACCCTC 146106 Query 25177 TCAGATCCATTCTTTCACATGCATGACGCGACCGTGCGTCAAACGTTCATCGATTCCGTC 25236 ||||||| ||||| | | ||||| | | | || ||| ||| ||| | Sbjct 146107 GCAGATCCTTTCTTCTTCTTCGATGACCCAGTTAAGAGACACCGTTTCGTCGCTTCAGCG 146166 Query 25237 GAGGACTTTCTCTTGACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCG 25296 |||| || || | || ||||| | || ||||| ||||||| ||||||||||| || Sbjct 146167 AAGGAGTTCCTTCTAACCTGGAAAATGTTTGACGGTCTCGACATCGACTGGGAGTTCCCC 146226 Query 25297 GGCGGCAAAGGGGCCAA 25313 || |||||||| || || Sbjct 146227 GGAGGCAAAGGAGCTAA 146243 >seq209 Length=133430 Score = 152 bits (168), Expect = 5e-32 Identities = 487/748 (65%), Gaps = 13/748 (2%) Strand=Plus/Minus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 ||||||||||||||||| || || | | |||||||| |||| | || ||| || Sbjct 14693 TGATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGATAAATGTTTGAAGTAAAT 14634 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 || ||||| || |||||||| || | ||||| || || | ||| || |||||| || Sbjct 14633 GGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGGTGCT 14574 Query 147010 ACCAACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTCAAAGTTTGCCAG 147066 | | ||||| || || ||||| | | ||| || || ||||| | | |||| Sbjct 14573 AGTAGTAATGAGTTACGAAGACCATTCTTTGCA---ATTTTTTCCTTAAGAACAGACCAG 14517 Query 147067 TCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCG 147126 ||||||| || || || | |||||| || || || | | |||| ||||||| Sbjct 14516 TCCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGCT 14457 Query 147127 GGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 ||||| || | | || | || ||| || || || | ||||| |||||| || Sbjct 14456 GGACTTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTCC 14397 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 | || ||||||||||| ||||| ||||||| ||| | | | |||| || || Sbjct 14396 AAGGCGCCATAGTATATTGTTTCAAATATTTGTTGGTTCAACTTGATAGCTTTCTCACTT 14337 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 || || || ||||||| | ||||||| ||||| | ||| || | || | || || Sbjct 14336 TCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCTATG 14277 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGC-GCTCGCTATGGGATAGTGGTTGCGATCAAT 147365 || | |||| | || | || || || | |||| || |||| |||||| Sbjct 14276 GGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGG-TAAAAGTTGACATCAAT 14218 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTA-TTGTTTTGAGTTTCTCGAAATCAT 147424 || ||||| || || | || | ||| || | || |||| | ||| || |||| Sbjct 14217 TATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTT-TCAAAATTGA 14159 Query 147425 AAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 |||| |||| || || | ||| | || || || |||| ||| ||||| | Sbjct 14158 AAGTTTTATCTT---CATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTG 14102 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 | || || | |||||| || ||||| | || || |||||||||||||| Sbjct 14101 CAACTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTG 14042 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 || | ||||| ||||||||||| | |||||| | ||| || | | |||||||||| Sbjct 14041 TGCCAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTG 13982 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGAT 147632 || ||||| ||||| | ||| || || Sbjct 13981 TTCCAGTCTCCACTTGAGCTTCTACAAT 13954 >seq170 Length=994537 Score = 123 bits (136), Expect = 2e-23 Identities = 121/151 (80%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 51730 TAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCG-CGTTCGGAGCGCCGTGG 51788 ||||||||| ||||| | |||||| ||||| | || ||| | || | || |||||||| Sbjct 674148 TAGCCTCGATGTTGCCGAGGTCGCCCACGTGCCTCA-CGCTGGCGCTGGGGGCGCCGTGC 674206 Query 51789 TCGCTGCCG-GTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCC 51847 || |||| |||||||||||||| |||||| |||||||||||||| || ||||||| Sbjct 674207 TC-CTGCTTCGTGGGGTTGAAGTGCGGGCCCGCGGACGTGCAGCCGTTCGTGTTGTCGCC 674265 Query 51848 GAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 ||| |||||||||||||| || ||| |||| Sbjct 674266 GAACTCGTGCACGTGGAAACCATGCTTGCCC 674296 >seq286 Length=933739 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||| || ||| | ||| || |||||| ||||||||||| | | Sbjct 377821 GATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCA 377762 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||| |||||||| ||||| ||||| || ||||||| ||| | Sbjct 377761 AAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATTTTTGCTTTAACG 377702 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| ||||| | || | |||||||||||||| || || Sbjct 377701 TTTTCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGTTTTACCAGTCAGGGTCTTG 377642 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 377641 ACAAAAATTTGCAT 377628 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTAC 131963 ||| | ||| |||||||| | | |||||||||||||| |||||||| | | || || | Sbjct 782214 CAATCTCAAGACCAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGATAAT-GTGC 782156 Query 131964 GCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023 | |||||| |||||||| || | | | || | | || || ||||| || ||||||| Sbjct 782155 GACCATCTTCTAGCTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGGGGAATGCCTT 782096 Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 | ||||| |||||| |||| | || | || || | || |||||||| | | Sbjct 782095 CCTTATCTTGAATTTTAGCCTTCACATTCTCAATGGTGTCTGATGGTTCCACTTCTAAAG 782036 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | || || ||||| | ||||| | |||||| ||||| Sbjct 782035 TGATAGTCTTGCCAGTTAATGTTTTGACGAAAATTTGCAT 781996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| || || | | | || || ||||||||||| || ||| | ||| | | Sbjct 377614 CGCAAAACTAAGTGAAGGGTAGATTCCTTTTGAATGTTATAATCGGAGAGGGTCCTTCCA 377555 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || || |||| | | || || | || || || ||||| || || |||||| Sbjct 377554 TCTTCCAATTGCTTTCCGGCAAAAATAAGCCTTTGCTGGTCGGGAGGAATACCCTCTTTA 377495 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||| || | ||| || || || | || | Sbjct 377494 TCTTGAATTTTAGCTTTTACATTTTCGATAGTGTCAGACGGTTCAACCTCTAATGTAATG 377435 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||||||| | ||||||||||| Sbjct 377434 GTTTTACCCGTAAGAGTTTTCACAAAAATCTGCAT 377400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||| || ||| | ||| || |||||| ||||||||||| | | Sbjct 379189 GATTCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCA 379130 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||| |||||||| ||||| ||||| || ||| || || | Sbjct 379129 AAGATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACG 379070 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || || |||| || ||| Sbjct 379069 TTCTCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTT 379010 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 379009 ACAAATATTTGCAT 378996 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | ||||| || || ||||||||||| | || || |||||| Sbjct 380116 ACCAAGTGTAAAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTGCGACCATCTTCT 380057 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||| | | |||| |||||||| || |||||||| || |||||||| || | Sbjct 380056 AGTTGTTTACCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATACCTTCTTTGTCCTGA 379997 Query 132035 ATTTT 132039 ||||| Sbjct 379996 ATTTT 379992 >seq2618 Length=201275 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| | ||||| ||| || | |||||||| | Sbjct 161663 GATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCCTCCAATTGTTTACCAGCG 161722 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||||||| |||||||| || ||||| || || ||||| |||| Sbjct 161723 AAGATCAAACGCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATTTTAGCCTTCACA 161782 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| | |||||| || | || | || ||||| || || |||||| Sbjct 161783 TTTTCGATAGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTT 161842 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 161843 ACGAAGATCTGCAT 161856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476590443582240