Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq209 542 4e-149 seq995 116 5e-21 >seq209 Length=133430 Score = 542 bits (600), Expect = 4e-149 Identities = 1210/1792 (68%), Gaps = 31/1792 (2%) Strand=Plus/Minus Query 68351 ACTTT-ATTTTATCCTTATCCAATGTAAACTGAATGGG-TGAGGATGCGGGTTTTGTACG 68408 ||||| | |||| |||||| | ||| || ||||| | | || | || |||||||| || Sbjct 15053 ACTTTCACTTTAGACTTATCAACTGTGAATTGAATTGCATTAGCA-GCTGGTTTTGTGCG 14995 Query 68409 TAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAG 68468 || ||||||||| || |||||||| || | |||| | || || || || ||||| Sbjct 14994 TAAATAGTACATTCCTGTTTTCAGTCCCATTTTCCAAGCATAAAAGTGTATTGATGTTAA 14935 Query 68469 TTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGC 68528 || |||| | || || || | |||||| || | ||||| ||||| || ||||| || Sbjct 14934 CTTTCCATAATTAGGTTCAGCAACATGAATGTTGAAAGATTGGCTTTGGTCAATGAATGC 14875 Query 68529 TCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAA 68588 || ||||| || ||||||| || | |||| | |||||||||| |||||| | Sbjct 14874 ACCCCTATCAGCAGCCATTTGAATTGTTGTCTTAACTGATATTTCCCAAACTGTCTTATA 14815 Query 68589 AATCTGTTTGATATCATCTGGAAG-GCTCGTAT--TTTGAATGGATCCACCATCGGATAT 68645 | | | |||| || | || | ||| ||| ||||||| || ||| | | ||| Sbjct 14814 CAAATCTCTGATTTCTTTAGGTATTGCTTCTATATTTTGAATAGAACCATTGTTGTGTAT 14755 Query 68646 AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATG 68705 || | ||| || || || |||| ||| || | | | || ||| | ||||| | || Sbjct 14754 TATAAGATTTTTCATGTCTTCATCCCATAAATCTGCTTGTGTCAAATCCCTAAGCAAGTG 14695 Query 68706 CGGATTAACTATTTGAAATTCCCCAGATAACAC---TCTACGAGTGTAAATATTACTGGT 68762 |||| || | ||||||||| |||||||| || ||| || ||||| || || Sbjct 14694 GTGATTGACCACTTGAAATTCTCCAGATAATACACGTCTTTGA---TAAATGTTTGAAGT 14638 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 | ||||||| | ||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 14637 AAATGGTTCAAATGATTCATTATTACCAAGAATTTGTGCAGTAGATGCCGTGGGCATGGG 14578 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCA 68882 ||| | | ||| || | |||||||| || ||||| || || ||| ||| Sbjct 14577 TGCTAGTAGTAATGAGTTACGAAGACCATTCTTTGCAATTTTTTCCTTAAGAACAGACCA 14518 Query 68883 ATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGC 68942 ||||| | ||| |||||| || ||| | ||| ||||||| |||||| | ||| || Sbjct 14517 GTCCCACAAATCTGATGGTGTTTTATCCCACATATCATATTGTAAAATTCCTTGACTGGC 14458 Query 68943 ATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTC 69002 ||| | ||| || ||| ||| || | || || ||||||| ||||| || Sbjct 14457 TGGACTTCCTTCATAAGTGCTATATACTCCATCTTTCTCTGCAAGTTCACTGCTTGCTTC 14398 Query 69003 TAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG--TGCTTCTAGA 69060 || || || || || |||||||| || || || || | | |||| |||| | Sbjct 14397 CAAGGCGCCATAGTATATTGTTTCAAATAT-TTGTTGGT-TCAACTTGATAGCTTTCTCA 14340 Query 69061 CTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCG 69120 || || ||||| | | | | || ||| | || || | || ||||| ||||| || Sbjct 14339 CTTTCATATGGAATACGCATTAAAACAAAGGTGTCGGCTAGACCTTGAACTCCAATTCCT 14280 Query 69121 ATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCT 69180 || || ||||| || |||||| ||| ||||||||||| || ||| | || | ||| Sbjct 14279 ATGGGCCTATGCCTAAGATTTGAGTTTTTAGCTTCTGGAACTGGGTAAAAGTTGACATCA 14220 Query 69181 ATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 69240 || ||||| ||||||||| | || || ||| ||| || |||| || ||||| Sbjct 14219 ATTATTTTGTTAAGATTTTGTGTTATTATTTTGGTCACTTCTTTTAACTTTTCAAAATTG 14160 Query 69241 AATCGTCCATCT---ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 || | |||| |||||||||| || ||||||| || || | |||||| ||||| Sbjct 14159 AAAGTTTTATCTTCATTAACAAACATGTTTAGTGCTATTGAAGCCAAATTACAGACTGCA 14100 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || |||| || || || | || || || ||||| ||||| || ||||| || || Sbjct 14099 ACTTCATCTGATGATGTGTACTCTACAATTTCAGTACAGAGATTGCTGCATTTTATTGTG 14040 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTA 69417 || ||||||| ||||| || ||| | || |||| |||||| || | || |||| || Sbjct 14039 CCAAGATTTTTTTGATTGCTTTTTCTATTGCAGGAGTCCTTATATAACATGTACGGTGTT 13980 Query 69418 CCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTC 69477 ||||| || | |||| ||| | ||| | |||||| | | | || |||| | | | Sbjct 13979 CCAGTCTCCACTTGAGCTTCTACAATTGCTTTCCATAACATCTGCGCTTTTACT-TGCTT 13921 Query 69478 TTGTAAC-GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAAC 69536 ||| || |||| |||||||| | ||||||| ||| || || ||||||||| Sbjct 13920 AACAAACTTTTTTTCTTGTTCATATTTTTCATATAGCTTTTCAAACTCTTCTCCCCAACA 13861 Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--- 69593 ||| | ||||| || |||| |||||||| ||| || || || || | || Sbjct 13860 ATCTGAAAGGCCAGGGCAATCATGGGGACACAT-AAT-ACTCCA-ATTTTCGTTTTTTTC 13804 Query 69594 AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATT 69653 ||| | ||||||||||| ||| || ||||||||||| ||| | ||||| | | Sbjct 13803 AACCCTTTTCATAAATAAATCTGGTATCCAAAGAGCATAAAACAACTCTCTTGCACGGAC 13744 Query 69654 TTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 |||||| || |||||||||||||| ||||| | || || | |||||| | ||||||||| Sbjct 13743 TTCTTCTTTCCCTGTATTTTTTTTGAGATCTAAGAATTCAAAAATATCTGCATGCCATGG 13684 Query 69714 TTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGC 69773 ||| | || || || | | || |||| ||||| || || ||||||| ||||| || Sbjct 13683 TTCCAAGTAAATAGCAAATGCACCAGGTCTCTTATTGCCGCCTTGATCTACATATCTAGC 13624 Query 69774 AGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGA 69833 ||||| ||||| ||||| | ||| || | | |||||||| ||||||||||||| Sbjct 13623 TGTGTTGTTATATACTCTTAACATTGGTACCAATCCATTAGAAACTCCATTTGTTCCAGC 13564 Query 69834 AATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTT 69893 || || ||| | || | ||| | | | ||||||||| || || || ||| Sbjct 13563 TATGTAGGACCCTTTAGCCCTTATACAATGTACATGTAGACCTATACCACCAGCTGATTT 13504 Query 69894 AGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953 || || | ||||| |||| | || |||||||| || || || || || ||| |||| Sbjct 13503 TGAAATCATTGCACATTGTTTAAGAGTATCATATATTCCTTCAATACTGTCGTCTTTCAT 13444 Query 69954 -GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAG 70012 | || ||| ||||| ||| | || | ||| | ||| || | ||| | Sbjct 13443 AGCTATTAAG-AAACAAGAAGAAAGCTGTGGCCTCGGAGTAGCAGCAGAGAAAAGTGTTG 13385 Query 70013 GAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA 70072 || ||| || || || |||||||||| | || |||||||| | || || | || | Sbjct 13384 GACTTGCATGTGTAAAGTATTTTTCAGATAACAAGTTGTATGTATTGATGGCAGCATCAA 13325 Query 70073 TATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 ||| ||| ||| ||||| || || || | ||| | ||||||||| |||| Sbjct 13324 CATCTTCAC-CATGTATTCCAATTGCAACTCTCATAAGCATATGCTGTGGTC 13274 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 |||||||||||||||| || || ||| |||||| ||||||||| |||||||||||||| Sbjct 13088 TTATTATTTATTTTCAGCAAATAAGATCTTTCCAAAGTTTTAAATCCAAAATAGTTGTAC 13029 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTT 70238 ||| ||||| || || | || | |||| ||| | ||||| Sbjct 13028 TTAAAATCTCTGTCATATACTATTGCCGAATCCAGTCTCTCCTT 12985 >seq995 Length=359585 Score = 116 bits (128), Expect = 5e-21 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | |||||| || || | ||| ||||| ||||||||||||| Sbjct 124823 CCTCATCCCTAGAAATCAGCTCGTTACTGAAGGTTAATCCTGGCATCAGACCACGCTTTT 124882 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || |||| ||||| |||||| ||||| || || || || || || || | Sbjct 124883 TCAACCAGAAGATGGAGGCAAAGCTTCCAGAGAAGAATATTCCCTCAACAGCAGCGAAGG 124942 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 ||| || ||| || || | ||| || | || |||||||| |||||||| | Sbjct 124943 CAATAATTCTTTCACCAAAGGTTGCCGTCTTGCTGCCTATCCACTGTAAGGCCCAATCTG 125002 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||||||||| || | |||||| || ||||| || Sbjct 125003 CCTTCTTCTTTACACAGGGAAGTGTTTCAATTGCATTGAA 125042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686878885121760