Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoebis_20sennae_20[genbank_20GCA_5F001586405.1_202016-03-10] 3,484 sequences; 287,490,372 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq286 105 6e-18 >seq286 Length=933739 Score = 105 bits (116), Expect = 6e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || |||||||||| || || || | || ||||||||||| || ||||| Sbjct 377818 TCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAG 377759 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-T 39212 ||||||||||| ||||| | || | || |||||||||| ||| ||| || || | || | Sbjct 377758 ATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCC-TGAATTTTTGCTTTAACGTT 377700 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || || | ||| || |||| ||||| |||| || ||||| || || || Sbjct 377699 TTCAATTGTGTCAGAAGGCTCTACTTCCAATGTGATGGTTTTACCAGTCAGGGTCTTGAC 377640 Query 39273 AAAGATTTGCAT 39284 ||| |||||||| Sbjct 377639 AAAAATTTGCAT 377628 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || |||||||||| || || || | || ||||||||||| || ||||| Sbjct 379186 TCCTTCTGAATGTTATAATCGGAGAGGGTGCGACCATCTTCAAGCTGTTTACCAGCAAAG 379127 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||||||||| ||||| | || | || |||||||||| || || |||| || Sbjct 379126 ATAAGACGCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTC 379067 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || | |||||| |||| ||||| | ||||| |||| || || ||| Sbjct 379066 TCAATTGTGTCCGAGGGCTCCACCTCCAAAGTGATGGTCTTTCCTGTCAATGTCTTTACA 379007 Query 39274 AAGATTTGCAT 39284 || |||||||| Sbjct 379006 AATATTTGCAT 378996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || ||||| | || | || ||||| || ||| || || || || Sbjct 379463 AAATATTTGCATACCACCTCTCAGACGAAGGACTAAATGGAGAGTGGATTCCTTCTGGAT 379404 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| || |||| || || || | || || || ||||| || || || || |||||||| Sbjct 379403 ATTGTAGTCGGAGAGAGTGCGACCATCTTCCAGTTGTTTACCAGCGAAGATCAGACGCTG 379344 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | || | || |||||||||| ||||| |||| || | | || || Sbjct 379343 CTGGTCTGGAGGGATGCCCTCTTTGTCCTGAATTTTAGCCTTGACGTTCTCAATTGTGTC 379284 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||||| |||| ||||| | ||||| |||| || || ||||| |||||||| Sbjct 379283 CGAAGGCTCCACCTCCAGAGTGATGGTCTTTCCTGTCAATGTCTTCACAAATATTTGCAT 379224 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || | || ||||||| || || ||||| ||||||||||| | | Sbjct 781310 CCACCTCTCAAACGCAGTACTAAATGTAATGTAGATTCCTTTTGGATATTATAATCAGAA 781251 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 || || ||| | || ||||||||||| || ||||| ||||| | ||||||||| Sbjct 781250 AGAGTGCGTCCATCTTCAAGCTGTTTACCAGCAAAAATAAGTCTCTGCTGGTC 781198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429527360956892